Expression of 1-1-7.1.3.12

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.882490.373
27DAP/17DAP0.975591
39DAP/27DAP0.967520.7
41DAP/39DAP1.10620.638
42DAP/41DAP1.048021
43DAP/42DAP1.015661
47DAP/43DAP1.011660.949
52DAP/47DAP1.090530.827
57DAP/52DAP1.042470.98

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.050960.96
17DAP/reference0.947140.63
27DAP/reference1.030610.771
39DAP/reference0.992770.941
41DAP/reference0.837310.114
42DAP/reference1.322550.159
43DAP/reference0.98365
47DAP/reference1.299640.284
52DAP/reference1.001971
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.980150.763
27DAP/17DAP1.018770.957
39DAP/27DAP1.032050.672
41DAP/39DAP0.995921
42DAP/41DAP1.006761
43DAP/42DAP1.075690.103
47DAP/43DAP1.000311
52DAP/47DAP1.014520.945
57DAP/52DAP1.010820.978
57DAP/7DAP0.985551

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.958680.296
17DAP/reference1.002851
27DAP/reference1.056490.041
39DAP/reference1.031830.511
41DAP/reference0.995950.741
42DAP/reference0.982460.32
43DAP/reference1.006731
47DAP/reference0.943850.168
52DAP/reference1.045820.212
57DAP/reference1.03860.331

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.02960.36
17DAP/reference1.105930.092
27DAP/reference1.190030.086
39DAP/reference1.119620.207
41DAP/reference1.115520.372
42DAP/reference1.146990.166
43DAP/reference1.078660.522
47DAP/reference1.000530.833
52DAP/reference1.138830.092
57DAP/reference1.104960.019

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.994790.75
17DAP/reference0.969010.47
27DAP/reference1.07920.12
39DAP/reference1.109580.03
41DAP/reference1.015710.984
42DAP/reference1.072890.272
43DAP/reference1.077910.254
47DAP/reference0.988970.538
52DAP/reference1.035730.714
57DAP/reference1.059650.41

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.020970.966
26DAP/20DAP1.003051
34DAP/26DAP1.057090.819
51DAP/34DAP1.000690.993
52DAP/51DAP0.941911
53DAP/52DAP0.944790.572
55DAP/53DAP0.955980.725
57DAP/55DAP1.039340.311
62DAP/57DAP0.85791
68DAP/62DAP1.019611
68DAP/14DAP0.979171

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.971260.576

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.076881
Mature Green Tomato/Ripe Tomato1.127420.523
Immature Eggplant/Mature Eggplant1.120630.3
Ripe Pepper/Ripe Tomato2.210441
Mature Eggplant/Ripe Tomato1.341921

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.961390.944
1-1-2/M820.94891
12-2/M820.763660.678
12-4/M820.873740.619
1-3/M821.581210.479
2-1-1/M821.021920.764
2-1/M821.115571
2-6/M821.246390.452
3-2/M820.90555
4-1-1/M821.032851
4-1/M820.943331
4-3-2/M821.004271
4-3/M821.329471
5-3/M821.116911
6-2/M821.473360.253
6-3/M821.128741
7-1/M821.183750.539
7-2/M821.824760.302
9-3-2/M820.819550.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.113140.365
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.061351
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.0951
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.329770.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.950151
DC3000/delta hrp 6h1.063051
DC3000/delta hrp 12h1.007981
DC3000/delta hrp 24h0.848380.134

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.024430.476
DC3000 delta B/DC3000 delta AB0.982910.892

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.984881
Exp 36h0.92160.749
Exp 60h0.93060.754

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.954981
Var 0h1.168090.782
Var 12h I row2-row11.15310.379
Var 12h NI row2-row11.018431
Var 36h I row2-row11.108341
Var 36h NI row2-row11.099881
Var 60h I row2-row11.132650.562
Var 60h NI row2-row11.112570.904
Time course 0hI-0hNI1.030351
Time course 12hI-12hNI1.007680.88
Time course 36hI-36hNI0.938480.132
Time course 60hI-60hNI1.167820.019

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.367170.318
transgenic ySAMdc/azygous control (breaker)1.517980.178
transgenic ySAMdc/azygous control (red)1.010481

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.96710.431

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.896990.35

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.357330.105
Manapal/WT (break)2.025610.381
Manapal/WT (red)0.952840.503