Expression of 1-1-7.1.3.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07253 | 0.919 |
27DAP/17DAP | 0.96886 | 0.939 |
39DAP/27DAP | 1.11506 | 0.876 |
41DAP/39DAP | 1.05822 | 1 |
42DAP/41DAP | 1.12469 | 1 |
43DAP/42DAP | 1.07452 | 1 |
47DAP/43DAP | 1.15897 | 0.542 |
52DAP/47DAP | 0.80923 | 0.521 |
57DAP/52DAP | 1.21477 | 0.963 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09236 | 0.638 |
17DAP/reference | 1.26992 | 0.258 |
27DAP/reference | 1.09685 | 0.291 |
39DAP/reference | 0.92003 | 0.174 |
41DAP/reference | 0.76358 | 0.012 |
42DAP/reference | 0.70912 | 0.019 |
43DAP/reference | 0.65537 | |
47DAP/reference | 0.91144 | 0.127 |
52DAP/reference | 0.94365 | 0.393 |
57DAP/reference | 2.58379 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86526 | 0.17 |
27DAP/17DAP | 1.11178 | 0.639 |
39DAP/27DAP | 0.62091 | 0.031 |
41DAP/39DAP | 1.53534 | 0.073 |
42DAP/41DAP | 0.86889 | 0.391 |
43DAP/42DAP | 1.02323 | 1 |
47DAP/43DAP | 1.05504 | 0.817 |
52DAP/47DAP | 0.85449 | 0.538 |
57DAP/52DAP | 1.09494 | 0.589 |
57DAP/7DAP | 0.8886 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25768 | 0.078 |
17DAP/reference | 1.03235 | 0.896 |
27DAP/reference | 0.86374 | 0.031 |
39DAP/reference | 0.88206 | 0.109 |
41DAP/reference | 0.83596 | 0.037 |
42DAP/reference | 0.95342 | 0.355 |
43DAP/reference | 0.79443 | 0.027 |
47DAP/reference | 0.80037 | 0.101 |
52DAP/reference | 0.79064 | 0.035 |
57DAP/reference | 0.77552 | 0.03 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.261 | 0.122 |
17DAP/reference | 1.13793 | 0.143 |
27DAP/reference | 1.09508 | 0.38 |
39DAP/reference | 0.83452 | 0.048 |
41DAP/reference | 1.10881 | 0.199 |
42DAP/reference | 0.82275 | 0.073 |
43DAP/reference | 0.98348 | 0.657 |
47DAP/reference | 0.81585 | 0.017 |
52DAP/reference | 1.06815 | 0.882 |
57DAP/reference | 1.06157 | 0.737 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21584 | 0.039 |
17DAP/reference | 0.97729 | 0.579 |
27DAP/reference | 0.84349 | 0.035 |
39DAP/reference | 0.94905 | 0.199 |
41DAP/reference | 0.98833 | 0.682 |
42DAP/reference | 0.80521 | 0.049 |
43DAP/reference | 0.92233 | 0.319 |
47DAP/reference | 0.91754 | 0.335 |
52DAP/reference | 0.95755 | 0.582 |
57DAP/reference | 1.04917 | 0.827 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.89768 | 1 |
26DAP/20DAP | 0.90224 | 1 |
34DAP/26DAP | 1.02896 | 1 |
51DAP/34DAP | 0.87124 | 0.727 |
52DAP/51DAP | 1.10293 | 0.758 |
53DAP/52DAP | 1.21184 | 0.901 |
55DAP/53DAP | 1.20493 | 0.696 |
57DAP/55DAP | 0.98991 | 0.925 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 1.34029 | 0.024 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07966 | 0.865 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.16825 | |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 5.98895 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.87042 | |
1-1-2/M82 | 0.92727 | 1 |
12-2/M82 | 0.9007 | |
12-4/M82 | 1.13087 | 1 |
1-3/M82 | 0.7332 | 0.441 |
2-1-1/M82 | 1.20294 | 0.689 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.15272 | 0.695 |
3-2/M82 | N/A | N/A |
4-1-1/M82 | 1.09391 | |
4-1/M82 | 1.5352 | |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.07997 | 1 |
5-3/M82 | 0.887 | 0.364 |
6-2/M82 | 1.17119 | |
6-3/M82 | N/A | N/A |
7-1/M82 | 0.9751 | 1 |
7-2/M82 | 1.07753 | |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92371 | 1 |
IL2-6/WTpooled | 0.98451 | 1 |
IL7-5/WTpooled | 1.17028 | 0.792 |
IL7-3/WTpooled | 1.06047 | 1 |
IL12-4/WTpooled | 1.05834 | 0.673 |
IL1-4/WTpooled | 1.07537 | 1 |
WT/WTpooled | 1.06152 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.74097 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9993 | 1 |
DC3000/delta hrp 6h | 1.27268 | 1 |
DC3000/delta hrp 12h | 0.95071 | 1 |
DC3000/delta hrp 24h | 1.00924 | 0.779 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.97225 | 0.916 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.7093 | 1 |
Exp 36h | 1.07434 | 1 |
Exp 60h | 0.93289 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98972 | 1 |
Var 0h | 0.94583 | 0.933 |
Var 12h I row2-row1 | 0.93044 | 0.705 |
Var 12h NI row2-row1 | 0.96152 | 0.906 |
Var 36h I row2-row1 | 1.36112 | 0.908 |
Var 36h NI row2-row1 | 0.56884 | 0.522 |
Var 60h I row2-row1 | 1.26744 | 0.562 |
Var 60h NI row2-row1 | 0.98046 | 1 |
Time course 0hI-0hNI | 0.93293 | 0.527 |
Time course 12hI-12hNI | 0.87969 | 0.144 |
Time course 36hI-36hNI | 0.90176 | 0.082 |
Time course 60hI-60hNI | 0.6666 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02153 | 0.654 |
transgenic ySAMdc/azygous control (breaker) | 0.95441 | 1 |
transgenic ySAMdc/azygous control (red) | 1.50679 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.94469 | 0.186 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.67634 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88474 | 1 |
Manapal/WT (break) | 1.08874 | 0.381 |
Manapal/WT (red) | N/A | N/A |
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