Expression of 1-1-7.1.3.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.072530.919
27DAP/17DAP0.968860.939
39DAP/27DAP1.115060.876
41DAP/39DAP1.058221
42DAP/41DAP1.124691
43DAP/42DAP1.074521
47DAP/43DAP1.158970.542
52DAP/47DAP0.809230.521
57DAP/52DAP1.214770.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.092360.638
17DAP/reference1.269920.258
27DAP/reference1.096850.291
39DAP/reference0.920030.174
41DAP/reference0.763580.012
42DAP/reference0.709120.019
43DAP/reference0.65537
47DAP/reference0.911440.127
52DAP/reference0.943650.393
57DAP/reference2.58379

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.865260.17
27DAP/17DAP1.111780.639
39DAP/27DAP0.620910.031
41DAP/39DAP1.535340.073
42DAP/41DAP0.868890.391
43DAP/42DAP1.023231
47DAP/43DAP1.055040.817
52DAP/47DAP0.854490.538
57DAP/52DAP1.094940.589
57DAP/7DAP0.88861

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.257680.078
17DAP/reference1.032350.896
27DAP/reference0.863740.031
39DAP/reference0.882060.109
41DAP/reference0.835960.037
42DAP/reference0.953420.355
43DAP/reference0.794430.027
47DAP/reference0.800370.101
52DAP/reference0.790640.035
57DAP/reference0.775520.03

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.2610.122
17DAP/reference1.137930.143
27DAP/reference1.095080.38
39DAP/reference0.834520.048
41DAP/reference1.108810.199
42DAP/reference0.822750.073
43DAP/reference0.983480.657
47DAP/reference0.815850.017
52DAP/reference1.068150.882
57DAP/reference1.061570.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.215840.039
17DAP/reference0.977290.579
27DAP/reference0.843490.035
39DAP/reference0.949050.199
41DAP/reference0.988330.682
42DAP/reference0.805210.049
43DAP/reference0.922330.319
47DAP/reference0.917540.335
52DAP/reference0.957550.582
57DAP/reference1.049170.827

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.897681
26DAP/20DAP0.902241
34DAP/26DAP1.028961
51DAP/34DAP0.871240.727
52DAP/51DAP1.102930.758
53DAP/52DAP1.211840.901
55DAP/53DAP1.204930.696
57DAP/55DAP0.989910.925
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP1.340290.024

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.079660.865

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.16825
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato5.98895

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.87042
1-1-2/M820.927271
12-2/M820.9007
12-4/M821.130871
1-3/M820.73320.441
2-1-1/M821.202940.689
2-1/M82N/AN/A
2-6/M821.152720.695
3-2/M82N/AN/A
4-1-1/M821.09391
4-1/M821.5352
4-3-2/M82N/AN/A
4-3/M821.079971
5-3/M820.8870.364
6-2/M821.17119
6-3/M82N/AN/A
7-1/M820.97511
7-2/M821.07753
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.923711
IL2-6/WTpooled0.984511
IL7-5/WTpooled1.170280.792
IL7-3/WTpooled1.060471
IL12-4/WTpooled1.058340.673
IL1-4/WTpooled1.075371
WT/WTpooled1.061521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.740970.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.99931
DC3000/delta hrp 6h1.272681
DC3000/delta hrp 12h0.950711
DC3000/delta hrp 24h1.009240.779

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.972250.916

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.70931
Exp 36h1.074341
Exp 60h0.932890.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.989721
Var 0h0.945830.933
Var 12h I row2-row10.930440.705
Var 12h NI row2-row10.961520.906
Var 36h I row2-row11.361120.908
Var 36h NI row2-row10.568840.522
Var 60h I row2-row11.267440.562
Var 60h NI row2-row10.980461
Time course 0hI-0hNI0.932930.527
Time course 12hI-12hNI0.879690.144
Time course 36hI-36hNI0.901760.082
Time course 60hI-60hNI0.66660.007

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.021530.654
transgenic ySAMdc/azygous control (breaker)0.954411
transgenic ySAMdc/azygous control (red)1.506790.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.944690.186

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.676340.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.884741
Manapal/WT (break)1.088740.381
Manapal/WT (red)N/AN/A