Expression of 1-1-7.1.3.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.799050.178
27DAP/17DAP0.968680.967
39DAP/27DAP1.314260.301
41DAP/39DAP0.977260.772
42DAP/41DAP1.033941
43DAP/42DAP1.130661
47DAP/43DAP1.048860.979
52DAP/47DAP0.853220.607
57DAP/52DAP1.190050.935

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.86090.098
17DAP/reference0.852090.278
27DAP/reference1.089590.098
39DAP/reference1.042010.593
41DAP/reference0.97860.814
42DAP/reference1.038290.869
43DAP/reference1.225980.678
47DAP/reference1.154790.011
52DAP/reference1.063571
57DAP/reference0.39494

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.354470.036
27DAP/17DAP0.878230.132
39DAP/27DAP0.864490.134
41DAP/39DAP1.030111
42DAP/41DAP1.111680.622
43DAP/42DAP0.888570.293
47DAP/43DAP1.032960.827
52DAP/47DAP0.996060.97
57DAP/52DAP0.925280.628
57DAP/7DAP0.678171

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.104410.393
17DAP/reference1.271660.006
27DAP/reference1.297050.06
39DAP/reference1.390590.013
41DAP/reference1.50940.016
42DAP/reference1.444640.008
43DAP/reference1.274450.031
47DAP/reference1.32490.07
52DAP/reference1.487060.007
57DAP/reference1.511410.018

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.908270.286
17DAP/reference0.901840.182
27DAP/reference0.980830.576
39DAP/reference0.907520.168
41DAP/reference1.012421
42DAP/reference0.960590.392
43DAP/reference0.908650.314
47DAP/reference1.073420.116
52DAP/reference0.848070.015
57DAP/reference0.702220.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.182050.101
17DAP/reference1.090960.443
27DAP/reference1.45980.038
39DAP/reference1.296130.017
41DAP/reference1.338530.077
42DAP/reference1.274040.138
43DAP/reference1.14390.154
47DAP/reference1.078620.562
52DAP/reference1.14360.575
57DAP/reference1.186840.106

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.107880.966
26DAP/20DAP1.279340.385
34DAP/26DAP1.013191
51DAP/34DAP1.257670.271
52DAP/51DAP0.812731
53DAP/52DAP1.17630.662
55DAP/53DAP0.835710.159
57DAP/55DAP1.131330.745
62DAP/57DAP1.16227
68DAP/62DAP1.274350.626
68DAP/14DAP1.231760.419

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.917050.322

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.75510.217
Mature Green Tomato/Ripe Tomato1.018590.898
Immature Eggplant/Mature Eggplant1.22940.116
Ripe Pepper/Ripe Tomato1.283870.256
Mature Eggplant/Ripe Tomato0.784311

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.751140.616
1-1-2/M821.273581
12-2/M821.028781
12-4/M821.111171
1-3/M821.502250.26
2-1-1/M821.210440.457
2-1/M820.911940.74
2-6/M821.081621
3-2/M820.98884
4-1-1/M821.016371
4-1/M821.113821
4-3-2/M821.453090.284
4-3/M821.048971
5-3/M821.038991
6-2/M820.885221
6-3/M820.963891
7-1/M820.91321
7-2/M821.029861
9-3-2/M821.47120.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.02769
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled1.66013
WT/WTpooled0.62402

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.946690.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.015720.921
DC3000/delta hrp 6h1.071090.857
DC3000/delta hrp 12h1.168871
DC3000/delta hrp 24h0.634970.035

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.720620.047
DC3000 delta B/DC3000 delta AB0.771420.045

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.094611
Exp 36h1.04021
Exp 60h1.021721

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.975491
Var 0h0.988950.98
Var 12h I row2-row10.934510.565
Var 12h NI row2-row10.962930.906
Var 36h I row2-row11.01641
Var 36h NI row2-row11.750960.482
Var 60h I row2-row10.940130.582
Var 60h NI row2-row11.106681
Time course 0hI-0hNI0.96450.817
Time course 12hI-12hNI0.978120.874
Time course 36hI-36hNI0.858030.067
Time course 60hI-60hNI0.289440.005

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.03810.748
transgenic ySAMdc/azygous control (breaker)1.000121
transgenic ySAMdc/azygous control (red)1.017581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.108740.471

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.200010.233

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.175530.307
Manapal/WT (break)1.168841
Manapal/WT (red)0.924390.503