Expression of 1-1-7.1.3.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79905 | 0.178 |
27DAP/17DAP | 0.96868 | 0.967 |
39DAP/27DAP | 1.31426 | 0.301 |
41DAP/39DAP | 0.97726 | 0.772 |
42DAP/41DAP | 1.03394 | 1 |
43DAP/42DAP | 1.13066 | 1 |
47DAP/43DAP | 1.04886 | 0.979 |
52DAP/47DAP | 0.85322 | 0.607 |
57DAP/52DAP | 1.19005 | 0.935 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8609 | 0.098 |
17DAP/reference | 0.85209 | 0.278 |
27DAP/reference | 1.08959 | 0.098 |
39DAP/reference | 1.04201 | 0.593 |
41DAP/reference | 0.9786 | 0.814 |
42DAP/reference | 1.03829 | 0.869 |
43DAP/reference | 1.22598 | 0.678 |
47DAP/reference | 1.15479 | 0.011 |
52DAP/reference | 1.06357 | 1 |
57DAP/reference | 0.39494 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.35447 | 0.036 |
27DAP/17DAP | 0.87823 | 0.132 |
39DAP/27DAP | 0.86449 | 0.134 |
41DAP/39DAP | 1.03011 | 1 |
42DAP/41DAP | 1.11168 | 0.622 |
43DAP/42DAP | 0.88857 | 0.293 |
47DAP/43DAP | 1.03296 | 0.827 |
52DAP/47DAP | 0.99606 | 0.97 |
57DAP/52DAP | 0.92528 | 0.628 |
57DAP/7DAP | 0.67817 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10441 | 0.393 |
17DAP/reference | 1.27166 | 0.006 |
27DAP/reference | 1.29705 | 0.06 |
39DAP/reference | 1.39059 | 0.013 |
41DAP/reference | 1.5094 | 0.016 |
42DAP/reference | 1.44464 | 0.008 |
43DAP/reference | 1.27445 | 0.031 |
47DAP/reference | 1.3249 | 0.07 |
52DAP/reference | 1.48706 | 0.007 |
57DAP/reference | 1.51141 | 0.018 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90827 | 0.286 |
17DAP/reference | 0.90184 | 0.182 |
27DAP/reference | 0.98083 | 0.576 |
39DAP/reference | 0.90752 | 0.168 |
41DAP/reference | 1.01242 | 1 |
42DAP/reference | 0.96059 | 0.392 |
43DAP/reference | 0.90865 | 0.314 |
47DAP/reference | 1.07342 | 0.116 |
52DAP/reference | 0.84807 | 0.015 |
57DAP/reference | 0.70222 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.18205 | 0.101 |
17DAP/reference | 1.09096 | 0.443 |
27DAP/reference | 1.4598 | 0.038 |
39DAP/reference | 1.29613 | 0.017 |
41DAP/reference | 1.33853 | 0.077 |
42DAP/reference | 1.27404 | 0.138 |
43DAP/reference | 1.1439 | 0.154 |
47DAP/reference | 1.07862 | 0.562 |
52DAP/reference | 1.1436 | 0.575 |
57DAP/reference | 1.18684 | 0.106 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.10788 | 0.966 |
26DAP/20DAP | 1.27934 | 0.385 |
34DAP/26DAP | 1.01319 | 1 |
51DAP/34DAP | 1.25767 | 0.271 |
52DAP/51DAP | 0.81273 | 1 |
53DAP/52DAP | 1.1763 | 0.662 |
55DAP/53DAP | 0.83571 | 0.159 |
57DAP/55DAP | 1.13133 | 0.745 |
62DAP/57DAP | 1.16227 | |
68DAP/62DAP | 1.27435 | 0.626 |
68DAP/14DAP | 1.23176 | 0.419 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91705 | 0.322 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.7551 | 0.217 |
Mature Green Tomato/Ripe Tomato | 1.01859 | 0.898 |
Immature Eggplant/Mature Eggplant | 1.2294 | 0.116 |
Ripe Pepper/Ripe Tomato | 1.28387 | 0.256 |
Mature Eggplant/Ripe Tomato | 0.78431 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.75114 | 0.616 |
1-1-2/M82 | 1.27358 | 1 |
12-2/M82 | 1.02878 | 1 |
12-4/M82 | 1.11117 | 1 |
1-3/M82 | 1.50225 | 0.26 |
2-1-1/M82 | 1.21044 | 0.457 |
2-1/M82 | 0.91194 | 0.74 |
2-6/M82 | 1.08162 | 1 |
3-2/M82 | 0.98884 | |
4-1-1/M82 | 1.01637 | 1 |
4-1/M82 | 1.11382 | 1 |
4-3-2/M82 | 1.45309 | 0.284 |
4-3/M82 | 1.04897 | 1 |
5-3/M82 | 1.03899 | 1 |
6-2/M82 | 0.88522 | 1 |
6-3/M82 | 0.96389 | 1 |
7-1/M82 | 0.9132 | 1 |
7-2/M82 | 1.02986 | 1 |
9-3-2/M82 | 1.4712 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.02769 | |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 1.66013 | |
WT/WTpooled | 0.62402 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94669 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01572 | 0.921 |
DC3000/delta hrp 6h | 1.07109 | 0.857 |
DC3000/delta hrp 12h | 1.16887 | 1 |
DC3000/delta hrp 24h | 0.63497 | 0.035 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.72062 | 0.047 |
DC3000 delta B/DC3000 delta AB | 0.77142 | 0.045 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09461 | 1 |
Exp 36h | 1.0402 | 1 |
Exp 60h | 1.02172 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97549 | 1 |
Var 0h | 0.98895 | 0.98 |
Var 12h I row2-row1 | 0.93451 | 0.565 |
Var 12h NI row2-row1 | 0.96293 | 0.906 |
Var 36h I row2-row1 | 1.0164 | 1 |
Var 36h NI row2-row1 | 1.75096 | 0.482 |
Var 60h I row2-row1 | 0.94013 | 0.582 |
Var 60h NI row2-row1 | 1.10668 | 1 |
Time course 0hI-0hNI | 0.9645 | 0.817 |
Time course 12hI-12hNI | 0.97812 | 0.874 |
Time course 36hI-36hNI | 0.85803 | 0.067 |
Time course 60hI-60hNI | 0.28944 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.0381 | 0.748 |
transgenic ySAMdc/azygous control (breaker) | 1.00012 | 1 |
transgenic ySAMdc/azygous control (red) | 1.01758 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.10874 | 0.471 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.20001 | 0.233 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.17553 | 0.307 |
Manapal/WT (break) | 1.16884 | 1 |
Manapal/WT (red) | 0.92439 | 0.503 |
|
|