Expression of 1-1-7.1.4.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.75801 | 0.128 |
27DAP/17DAP | 0.93214 | 0.882 |
39DAP/27DAP | 1.25613 | 0.429 |
41DAP/39DAP | 0.85747 | 0.459 |
42DAP/41DAP | 1.20467 | 0.772 |
43DAP/42DAP | 0.77598 | 0.7 |
47DAP/43DAP | 0.94479 | 0.746 |
52DAP/47DAP | 1.0444 | 0.987 |
57DAP/52DAP | 1.01757 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47628 | 0.016 |
17DAP/reference | 1.05805 | 0.813 |
27DAP/reference | 0.94497 | 0.428 |
39DAP/reference | 1.09608 | 0.27 |
41DAP/reference | 1.06356 | 0.808 |
42DAP/reference | 1.11247 | 0.231 |
43DAP/reference | 0.93472 | 0.41 |
47DAP/reference | 0.95627 | 0.258 |
52DAP/reference | 1.00278 | 0.709 |
57DAP/reference | 1.09604 | 0.084 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.86997 | 0.299 |
27DAP/17DAP | 1.03025 | 0.954 |
39DAP/27DAP | 1.14597 | 0.541 |
41DAP/39DAP | 1.08411 | 0.682 |
42DAP/41DAP | 1.09764 | 0.514 |
43DAP/42DAP | 1.21664 | 0.026 |
47DAP/43DAP | 1.08813 | 0.552 |
52DAP/47DAP | 0.74345 | 0.084 |
57DAP/52DAP | 1.06954 | 0.818 |
57DAP/7DAP | 0.69029 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16738 | 0.079 |
17DAP/reference | 1.29596 | 0.011 |
27DAP/reference | 1.21729 | 0.014 |
39DAP/reference | 1.14117 | 0.036 |
41DAP/reference | 1.13021 | 0.057 |
42DAP/reference | 1.47699 | 0.014 |
43DAP/reference | 1.31932 | 0.066 |
47DAP/reference | 1.23454 | 0.084 |
52DAP/reference | 1.36434 | 0.021 |
57DAP/reference | 1.25477 | 0.017 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.52201 | 0.19 |
17DAP/reference | 1.12407 | 0.338 |
27DAP/reference | 1.21472 | 0.23 |
39DAP/reference | 1.01156 | 0.539 |
41DAP/reference | 0.91506 | 0.218 |
42DAP/reference | 1.64869 | 0.011 |
43DAP/reference | 1.25867 | 0.097 |
47DAP/reference | 1.14085 | 0.197 |
52DAP/reference | 0.96397 | 0.537 |
57DAP/reference | 1.1178 | 0.374 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16247 | 0.134 |
17DAP/reference | 1.13147 | 0.631 |
27DAP/reference | 1.04118 | 0.721 |
39DAP/reference | 1.13723 | 0.091 |
41DAP/reference | 1.45731 | 0.239 |
42DAP/reference | 1.3699 | 0.036 |
43DAP/reference | 1.29583 | 0.131 |
47DAP/reference | 1.23718 | 0.007 |
52DAP/reference | 1.02965 | 0.952 |
57DAP/reference | 1.68726 | 0.106 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.07213 | 1 |
26DAP/20DAP | 0.78828 | 1 |
34DAP/26DAP | 1.38278 | 1 |
51DAP/34DAP | 0.68396 | |
52DAP/51DAP | 0.73081 | 0.079 |
53DAP/52DAP | 1.20645 | |
55DAP/53DAP | 0.88098 | 0.489 |
57DAP/55DAP | 1.24922 | 0.728 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | 2.08936 | |
68DAP/14DAP | 1.0864 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.81695 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.82569 | 0.279 |
Mature Green Tomato/Ripe Tomato | 0.8918 | 0.347 |
Immature Eggplant/Mature Eggplant | 1.106 | 0.321 |
Ripe Pepper/Ripe Tomato | 2.14965 | 0.256 |
Mature Eggplant/Ripe Tomato | 1.42615 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08552 | 1 |
1-1-2/M82 | 1.16465 | 1 |
12-2/M82 | 0.92331 | 0.955 |
12-4/M82 | 0.83282 | 0.619 |
1-3/M82 | 1.21811 | 0.277 |
2-1-1/M82 | 1.07048 | 1 |
2-1/M82 | 0.69074 | 0.322 |
2-6/M82 | 1.02439 | 0.695 |
3-2/M82 | 0.99648 | |
4-1-1/M82 | 1.19297 | 0.998 |
4-1/M82 | 1.03705 | 1 |
4-3-2/M82 | 1.5079 | 0.241 |
4-3/M82 | 1.10589 | 1 |
5-3/M82 | 1.07703 | 1 |
6-2/M82 | 0.92374 | 1 |
6-3/M82 | 0.97363 | 1 |
7-1/M82 | 0.90944 | 1 |
7-2/M82 | 0.9109 | 0.796 |
9-3-2/M82 | 1.29588 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.97955 | 1 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 1.16424 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | 0.92242 | 0.834 |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20348 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.99546 | 1 |
DC3000/delta hrp 6h | 0.94451 | 0.95 |
DC3000/delta hrp 12h | 0.96636 | 1 |
DC3000/delta hrp 24h | 1.2588 | 0.077 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.23062 | 0.355 |
DC3000 delta B/DC3000 delta AB | 1.22234 | 0.212 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.09397 | 1 |
Exp 36h | 1.0203 | 1 |
Exp 60h | 1.11532 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | 0.69907 | |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.9152 | 0.348 |
transgenic ySAMdc/azygous control (breaker) | 0.92484 | 0.49 |
transgenic ySAMdc/azygous control (red) | 1.08396 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02779 | 0.372 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.75812 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.88888 | 1 |
Manapal/WT (break) | 1.09708 | 0.381 |
Manapal/WT (red) | 1.10161 | 0.413 |
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