Expression of 1-1-7.1.4.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.758010.128
27DAP/17DAP0.932140.882
39DAP/27DAP1.256130.429
41DAP/39DAP0.857470.459
42DAP/41DAP1.204670.772
43DAP/42DAP0.775980.7
47DAP/43DAP0.944790.746
52DAP/47DAP1.04440.987
57DAP/52DAP1.017571

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.476280.016
17DAP/reference1.058050.813
27DAP/reference0.944970.428
39DAP/reference1.096080.27
41DAP/reference1.063560.808
42DAP/reference1.112470.231
43DAP/reference0.934720.41
47DAP/reference0.956270.258
52DAP/reference1.002780.709
57DAP/reference1.096040.084

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.869970.299
27DAP/17DAP1.030250.954
39DAP/27DAP1.145970.541
41DAP/39DAP1.084110.682
42DAP/41DAP1.097640.514
43DAP/42DAP1.216640.026
47DAP/43DAP1.088130.552
52DAP/47DAP0.743450.084
57DAP/52DAP1.069540.818
57DAP/7DAP0.690291

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.167380.079
17DAP/reference1.295960.011
27DAP/reference1.217290.014
39DAP/reference1.141170.036
41DAP/reference1.130210.057
42DAP/reference1.476990.014
43DAP/reference1.319320.066
47DAP/reference1.234540.084
52DAP/reference1.364340.021
57DAP/reference1.254770.017

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.522010.19
17DAP/reference1.124070.338
27DAP/reference1.214720.23
39DAP/reference1.011560.539
41DAP/reference0.915060.218
42DAP/reference1.648690.011
43DAP/reference1.258670.097
47DAP/reference1.140850.197
52DAP/reference0.963970.537
57DAP/reference1.11780.374

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.162470.134
17DAP/reference1.131470.631
27DAP/reference1.041180.721
39DAP/reference1.137230.091
41DAP/reference1.457310.239
42DAP/reference1.36990.036
43DAP/reference1.295830.131
47DAP/reference1.237180.007
52DAP/reference1.029650.952
57DAP/reference1.687260.106

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.072131
26DAP/20DAP0.788281
34DAP/26DAP1.382781
51DAP/34DAP0.68396
52DAP/51DAP0.730810.079
53DAP/52DAP1.20645
55DAP/53DAP0.880980.489
57DAP/55DAP1.249220.728
62DAP/57DAPN/AN/A
68DAP/62DAP2.08936
68DAP/14DAP1.0864

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.816950.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.825690.279
Mature Green Tomato/Ripe Tomato0.89180.347
Immature Eggplant/Mature Eggplant1.1060.321
Ripe Pepper/Ripe Tomato2.149650.256
Mature Eggplant/Ripe Tomato1.426150.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.085521
1-1-2/M821.164651
12-2/M820.923310.955
12-4/M820.832820.619
1-3/M821.218110.277
2-1-1/M821.070481
2-1/M820.690740.322
2-6/M821.024390.695
3-2/M820.99648
4-1-1/M821.192970.998
4-1/M821.037051
4-3-2/M821.50790.241
4-3/M821.105891
5-3/M821.077031
6-2/M820.923741
6-3/M820.973631
7-1/M820.909441
7-2/M820.91090.796
9-3-2/M821.295880.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.979551
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.16424
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooled0.922420.834
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.203480.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995461
DC3000/delta hrp 6h0.944510.95
DC3000/delta hrp 12h0.966361
DC3000/delta hrp 24h1.25880.077

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.230620.355
DC3000 delta B/DC3000 delta AB1.222340.212

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.093971
Exp 36h1.02031
Exp 60h1.115321

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNI0.69907

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.91520.348
transgenic ySAMdc/azygous control (breaker)0.924840.49
transgenic ySAMdc/azygous control (red)1.083960.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.027790.372

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.758120.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.888881
Manapal/WT (break)1.097080.381
Manapal/WT (red)1.101610.413