Expression of 1-1-7.1.7.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.01483 | 1 |
27DAP/17DAP | 0.99955 | 1 |
39DAP/27DAP | 1.0577 | 1 |
41DAP/39DAP | 1.14372 | 0.344 |
42DAP/41DAP | 1.08372 | 1 |
43DAP/42DAP | 0.99494 | 0.937 |
47DAP/43DAP | 1.16804 | 0.733 |
52DAP/47DAP | 1.12312 | 0.832 |
57DAP/52DAP | 0.92615 | 0.872 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.048 | 0.735 |
17DAP/reference | 1.12645 | 0.193 |
27DAP/reference | 1.03653 | 0.863 |
39DAP/reference | 1.18229 | 0.06 |
41DAP/reference | 1.1667 | 0.133 |
42DAP/reference | 0.91636 | 0.054 |
43DAP/reference | 1.04397 | 0.705 |
47DAP/reference | 1.02289 | 1 |
52DAP/reference | 0.90936 | 0.21 |
57DAP/reference | 1.00158 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97271 | 0.679 |
27DAP/17DAP | 0.97168 | 0.854 |
39DAP/27DAP | 1.05034 | 0.611 |
41DAP/39DAP | 1.04883 | 1 |
42DAP/41DAP | 1.01582 | 0.976 |
43DAP/42DAP | 0.97556 | 0.801 |
47DAP/43DAP | 1.05891 | 0.756 |
52DAP/47DAP | 1.04435 | 0.826 |
57DAP/52DAP | 1.01187 | 1 |
57DAP/7DAP | 1.05638 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88199 | 0.122 |
17DAP/reference | 1.7588 | 0.009 |
27DAP/reference | 1.50724 | 0.088 |
39DAP/reference | 1.54613 | 0.12 |
41DAP/reference | 1.82784 | 0.024 |
42DAP/reference | 1.73647 | 0.046 |
43DAP/reference | 2.18343 | 0.009 |
47DAP/reference | 0.92087 | 0.504 |
52DAP/reference | 1.69141 | 0.007 |
57DAP/reference | 1.3993 | 0.049 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16663 | 0.19 |
17DAP/reference | 1.12888 | 0.543 |
27DAP/reference | 0.924 | 0.317 |
39DAP/reference | 0.97253 | 0.485 |
41DAP/reference | 1.08756 | 0.382 |
42DAP/reference | 1.14894 | 0.422 |
43DAP/reference | 1.29884 | 0.515 |
47DAP/reference | 1.24356 | 0.011 |
52DAP/reference | 0.94636 | 0.407 |
57DAP/reference | 1.06419 | 0.98 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83848 | 0.23 |
17DAP/reference | 1.34386 | 0.311 |
27DAP/reference | 1.71959 | 0.016 |
39DAP/reference | 1.79725 | 0.009 |
41DAP/reference | 1.33576 | 0.249 |
42DAP/reference | 1.3248 | 0.154 |
43DAP/reference | 1.12612 | 0.961 |
47DAP/reference | 0.92128 | 0.396 |
52DAP/reference | 1.82856 | 0.06 |
57DAP/reference | 0.98334 | 0.583 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9523 | 1 |
26DAP/20DAP | 1.03658 | 0.962 |
34DAP/26DAP | 1.02132 | 1 |
51DAP/34DAP | 1.00879 | 0.988 |
52DAP/51DAP | 1.35429 | |
53DAP/52DAP | 1.06612 | 0.901 |
55DAP/53DAP | 0.80839 | 0.282 |
57DAP/55DAP | 0.87677 | 0.508 |
62DAP/57DAP | 0.95884 | |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.79056 | 0.043 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 8.04291 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.70169 | 0.058 |
Immature Eggplant/Mature Eggplant | 10.0022 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.47256 | |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.74325 | 0.907 |
1-1-2/M82 | 1.19983 | 1 |
12-2/M82 | 1.14194 | 1 |
12-4/M82 | 1.04232 | 1 |
1-3/M82 | 0.92739 | 1 |
2-1-1/M82 | 2.03277 | |
2-1/M82 | 1.49667 | 1 |
2-6/M82 | 1.04654 | 0.695 |
3-2/M82 | 1.17012 | |
4-1-1/M82 | 0.86896 | 1 |
4-1/M82 | 0.93324 | |
4-3-2/M82 | 0.44141 | |
4-3/M82 | 0.60341 | 0.72 |
5-3/M82 | 1.37359 | 0.572 |
6-2/M82 | 1.02909 | 1 |
6-3/M82 | 0.93745 | 1 |
7-1/M82 | 1.2141 | 1 |
7-2/M82 | 0.93895 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | N/A | N/A |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | N/A | N/A |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95038 | 1 |
DC3000/delta hrp 6h | 1.04268 | 1 |
DC3000/delta hrp 12h | 0.91448 | 1 |
DC3000/delta hrp 24h | 1.01468 | 0.84 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1044 | 0.057 |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00088 | 1 |
Var 0h | 1.17086 | 0.936 |
Var 12h I row2-row1 | 1.15057 | 0.209 |
Var 12h NI row2-row1 | 1.12286 | 1 |
Var 36h I row2-row1 | 1.00469 | 1 |
Var 36h NI row2-row1 | 0.93887 | 0.645 |
Var 60h I row2-row1 | 1.25361 | 1 |
Var 60h NI row2-row1 | 1.2012 | 0.904 |
Time course 0hI-0hNI | 1.08919 | 0.833 |
Time course 12hI-12hNI | 1.04502 | 0.785 |
Time course 36hI-36hNI | 1.00922 | 1 |
Time course 60hI-60hNI | 1.27 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11126 | 0.408 |
transgenic ySAMdc/azygous control (breaker) | 1.02695 | 1 |
transgenic ySAMdc/azygous control (red) | 1.21706 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03217 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.50194 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.48613 | 0.14 |
Manapal/WT (break) | 2.44833 | 0.183 |
Manapal/WT (red) | 1.20181 | 1 |
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