Expression of 1-1-7.1.7.16

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.014831
27DAP/17DAP0.999551
39DAP/27DAP1.05771
41DAP/39DAP1.143720.344
42DAP/41DAP1.083721
43DAP/42DAP0.994940.937
47DAP/43DAP1.168040.733
52DAP/47DAP1.123120.832
57DAP/52DAP0.926150.872

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.0480.735
17DAP/reference1.126450.193
27DAP/reference1.036530.863
39DAP/reference1.182290.06
41DAP/reference1.16670.133
42DAP/reference0.916360.054
43DAP/reference1.043970.705
47DAP/reference1.022891
52DAP/reference0.909360.21
57DAP/reference1.001580.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.972710.679
27DAP/17DAP0.971680.854
39DAP/27DAP1.050340.611
41DAP/39DAP1.048831
42DAP/41DAP1.015820.976
43DAP/42DAP0.975560.801
47DAP/43DAP1.058910.756
52DAP/47DAP1.044350.826
57DAP/52DAP1.011871
57DAP/7DAP1.056381

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.881990.122
17DAP/reference1.75880.009
27DAP/reference1.507240.088
39DAP/reference1.546130.12
41DAP/reference1.827840.024
42DAP/reference1.736470.046
43DAP/reference2.183430.009
47DAP/reference0.920870.504
52DAP/reference1.691410.007
57DAP/reference1.39930.049

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.166630.19
17DAP/reference1.128880.543
27DAP/reference0.9240.317
39DAP/reference0.972530.485
41DAP/reference1.087560.382
42DAP/reference1.148940.422
43DAP/reference1.298840.515
47DAP/reference1.243560.011
52DAP/reference0.946360.407
57DAP/reference1.064190.98

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.838480.23
17DAP/reference1.343860.311
27DAP/reference1.719590.016
39DAP/reference1.797250.009
41DAP/reference1.335760.249
42DAP/reference1.32480.154
43DAP/reference1.126120.961
47DAP/reference0.921280.396
52DAP/reference1.828560.06
57DAP/reference0.983340.583

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.95231
26DAP/20DAP1.036580.962
34DAP/26DAP1.021321
51DAP/34DAP1.008790.988
52DAP/51DAP1.35429
53DAP/52DAP1.066120.901
55DAP/53DAP0.808390.282
57DAP/55DAP0.876770.508
62DAP/57DAP0.95884
68DAP/62DAPN/AN/A
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.790560.043

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper8.042910.058
Mature Green Tomato/Ripe Tomato1.701690.058
Immature Eggplant/Mature Eggplant10.00220.05
Ripe Pepper/Ripe Tomato1.47256
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.743250.907
1-1-2/M821.199831
12-2/M821.141941
12-4/M821.042321
1-3/M820.927391
2-1-1/M822.03277
2-1/M821.496671
2-6/M821.046540.695
3-2/M821.17012
4-1-1/M820.868961
4-1/M820.93324
4-3-2/M820.44141
4-3/M820.603410.72
5-3/M821.373590.572
6-2/M821.029091
6-3/M820.937451
7-1/M821.21411
7-2/M820.938951
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooledN/AN/A
IL1-4/WTpooledN/AN/A
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.950381
DC3000/delta hrp 6h1.042681
DC3000/delta hrp 12h0.914481
DC3000/delta hrp 24h1.014680.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.10440.057
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000881
Var 0h1.170860.936
Var 12h I row2-row11.150570.209
Var 12h NI row2-row11.122861
Var 36h I row2-row11.004691
Var 36h NI row2-row10.938870.645
Var 60h I row2-row11.253611
Var 60h NI row2-row11.20120.904
Time course 0hI-0hNI1.089190.833
Time course 12hI-12hNI1.045020.785
Time course 36hI-36hNI1.009221
Time course 60hI-60hNI1.270.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.111260.408
transgenic ySAMdc/azygous control (breaker)1.026951
transgenic ySAMdc/azygous control (red)1.217060.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.032170.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.501940.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.486130.14
Manapal/WT (break)2.448330.183
Manapal/WT (red)1.201811