Expression of 1-1-7.1.8.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.983720.839
27DAP/17DAP1.128570.92
39DAP/27DAP1.034971
41DAP/39DAP0.920790.627
42DAP/41DAP0.794320.774
43DAP/42DAP0.930170.827
47DAP/43DAP1.086130.889
52DAP/47DAP1.105950.926
57DAP/52DAP0.919010.919

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.790610.077
17DAP/reference0.804060.028
27DAP/reference0.932850.395
39DAP/reference0.874940.254
41DAP/reference0.836170.065
42DAP/reference0.933040.115
43DAP/reference0.996780.82
47DAP/reference1.196580.014
52DAP/reference1.329080.059
57DAP/reference1.081590.3

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.397420.094
27DAP/17DAP0.904350.648
39DAP/27DAP1.008860.984
41DAP/39DAP1.012481
42DAP/41DAP1.020341
43DAP/42DAP0.982220.831
47DAP/43DAP0.973850.861
52DAP/47DAP0.97220.925
57DAP/52DAP1.176140.518
57DAP/7DAP0.873961

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.90160.246
17DAP/reference0.842080.015
27DAP/reference0.690290.01
39DAP/reference0.854840.027
41DAP/reference0.790480.023
42DAP/reference0.784240.017
43DAP/reference0.691170.012
47DAP/reference1.208080.659
52DAP/reference0.771090.027
57DAP/reference0.76830.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896730.176
17DAP/reference1.017170.548
27DAP/reference1.020981
39DAP/reference1.034811
41DAP/reference0.890150.118
42DAP/reference0.962680.433
43DAP/reference0.97270.561
47DAP/reference1.448890.482
52DAP/reference0.948870.38
57DAP/reference0.951360.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.773570.092
17DAP/reference0.812320.102
27DAP/reference0.795020.046
39DAP/reference0.774890.008
41DAP/reference0.902630.167
42DAP/reference0.683680.028
43DAP/reference0.806790.017
47DAP/reference0.712860.249
52DAP/reference0.823050.289
57DAP/reference0.812380.033

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.068021
26DAP/20DAP1.087480.962
34DAP/26DAP1.173140.819
51DAP/34DAP0.964030.743
52DAP/51DAP0.989661
53DAP/52DAP0.844970.621
55DAP/53DAP1.275180.301
57DAP/55DAP0.98870.923
62DAP/57DAP1.364140.303
68DAP/62DAP1.326190.305
68DAP/14DAP1.138481

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.365570.057

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.287720.067
Mature Green Tomato/Ripe Tomato0.928180.611
Immature Eggplant/Mature Eggplant2.437510.05
Ripe Pepper/Ripe Tomato0.985171
Mature Eggplant/Ripe Tomato0.518011

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.034380.877
1-1-2/M821.112461
12-2/M821.544330.61
12-4/M820.800960.619
1-3/M821.611880.248
2-1-1/M820.830440.784
2-1/M820.725030.322
2-6/M82N/AN/A
3-2/M821.14907
4-1-1/M820.50658
4-1/M820.55369
4-3-2/M821.130641
4-3/M820.927431
5-3/M820.906321
6-2/M820.915611
6-3/M820.96441
7-1/M820.752290.476
7-2/M821.153970.385
9-3-2/M821.03535

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.91005
IL2-6/WTpooled0.617330.348
IL7-5/WTpooled0.61063
IL7-3/WTpooled0.835541
IL12-4/WTpooled0.655740.581
IL1-4/WTpooled1.205191
WT/WTpooled0.987461

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.914550.497

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.141650.692
DC3000/delta hrp 6h1.02420.95
DC3000/delta hrp 12h1.026131
DC3000/delta hrp 24h1.378440.038

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.934090.418

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.271320.254
Exp 36h1.718020.326
Exp 60h1.816820.18

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.984791
Var 0h0.476911
Var 12h I row2-row10.924190.467
Var 12h NI row2-row10.881580.627
Var 36h I row2-row10.861540.805
Var 36h NI row2-row11.586781
Var 60h I row2-row10.884510.285
Var 60h NI row2-row11.034331
Time course 0hI-0hNI0.99881
Time course 12hI-12hNI1.027050.82
Time course 36hI-36hNI0.934270.25
Time course 60hI-60hNI0.678140.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.860350.3
transgenic ySAMdc/azygous control (breaker)1.49080.161
transgenic ySAMdc/azygous control (red)1.497040.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.212160.08

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt2.065940.222

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.818571
Manapal/WT (break)0.8971
Manapal/WT (red)0.587470.181