Expression of 1-1-7.1.8.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98372 | 0.839 |
27DAP/17DAP | 1.12857 | 0.92 |
39DAP/27DAP | 1.03497 | 1 |
41DAP/39DAP | 0.92079 | 0.627 |
42DAP/41DAP | 0.79432 | 0.774 |
43DAP/42DAP | 0.93017 | 0.827 |
47DAP/43DAP | 1.08613 | 0.889 |
52DAP/47DAP | 1.10595 | 0.926 |
57DAP/52DAP | 0.91901 | 0.919 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.79061 | 0.077 |
17DAP/reference | 0.80406 | 0.028 |
27DAP/reference | 0.93285 | 0.395 |
39DAP/reference | 0.87494 | 0.254 |
41DAP/reference | 0.83617 | 0.065 |
42DAP/reference | 0.93304 | 0.115 |
43DAP/reference | 0.99678 | 0.82 |
47DAP/reference | 1.19658 | 0.014 |
52DAP/reference | 1.32908 | 0.059 |
57DAP/reference | 1.08159 | 0.3 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.39742 | 0.094 |
27DAP/17DAP | 0.90435 | 0.648 |
39DAP/27DAP | 1.00886 | 0.984 |
41DAP/39DAP | 1.01248 | 1 |
42DAP/41DAP | 1.02034 | 1 |
43DAP/42DAP | 0.98222 | 0.831 |
47DAP/43DAP | 0.97385 | 0.861 |
52DAP/47DAP | 0.9722 | 0.925 |
57DAP/52DAP | 1.17614 | 0.518 |
57DAP/7DAP | 0.87396 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9016 | 0.246 |
17DAP/reference | 0.84208 | 0.015 |
27DAP/reference | 0.69029 | 0.01 |
39DAP/reference | 0.85484 | 0.027 |
41DAP/reference | 0.79048 | 0.023 |
42DAP/reference | 0.78424 | 0.017 |
43DAP/reference | 0.69117 | 0.012 |
47DAP/reference | 1.20808 | 0.659 |
52DAP/reference | 0.77109 | 0.027 |
57DAP/reference | 0.7683 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89673 | 0.176 |
17DAP/reference | 1.01717 | 0.548 |
27DAP/reference | 1.02098 | 1 |
39DAP/reference | 1.03481 | 1 |
41DAP/reference | 0.89015 | 0.118 |
42DAP/reference | 0.96268 | 0.433 |
43DAP/reference | 0.9727 | 0.561 |
47DAP/reference | 1.44889 | 0.482 |
52DAP/reference | 0.94887 | 0.38 |
57DAP/reference | 0.95136 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77357 | 0.092 |
17DAP/reference | 0.81232 | 0.102 |
27DAP/reference | 0.79502 | 0.046 |
39DAP/reference | 0.77489 | 0.008 |
41DAP/reference | 0.90263 | 0.167 |
42DAP/reference | 0.68368 | 0.028 |
43DAP/reference | 0.80679 | 0.017 |
47DAP/reference | 0.71286 | 0.249 |
52DAP/reference | 0.82305 | 0.289 |
57DAP/reference | 0.81238 | 0.033 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06802 | 1 |
26DAP/20DAP | 1.08748 | 0.962 |
34DAP/26DAP | 1.17314 | 0.819 |
51DAP/34DAP | 0.96403 | 0.743 |
52DAP/51DAP | 0.98966 | 1 |
53DAP/52DAP | 0.84497 | 0.621 |
55DAP/53DAP | 1.27518 | 0.301 |
57DAP/55DAP | 0.9887 | 0.923 |
62DAP/57DAP | 1.36414 | 0.303 |
68DAP/62DAP | 1.32619 | 0.305 |
68DAP/14DAP | 1.13848 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.36557 | 0.057 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.28772 | 0.067 |
Mature Green Tomato/Ripe Tomato | 0.92818 | 0.611 |
Immature Eggplant/Mature Eggplant | 2.43751 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.98517 | 1 |
Mature Eggplant/Ripe Tomato | 0.51801 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03438 | 0.877 |
1-1-2/M82 | 1.11246 | 1 |
12-2/M82 | 1.54433 | 0.61 |
12-4/M82 | 0.80096 | 0.619 |
1-3/M82 | 1.61188 | 0.248 |
2-1-1/M82 | 0.83044 | 0.784 |
2-1/M82 | 0.72503 | 0.322 |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.14907 | |
4-1-1/M82 | 0.50658 | |
4-1/M82 | 0.55369 | |
4-3-2/M82 | 1.13064 | 1 |
4-3/M82 | 0.92743 | 1 |
5-3/M82 | 0.90632 | 1 |
6-2/M82 | 0.91561 | 1 |
6-3/M82 | 0.9644 | 1 |
7-1/M82 | 0.75229 | 0.476 |
7-2/M82 | 1.15397 | 0.385 |
9-3-2/M82 | 1.03535 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.91005 | |
IL2-6/WTpooled | 0.61733 | 0.348 |
IL7-5/WTpooled | 0.61063 | |
IL7-3/WTpooled | 0.83554 | 1 |
IL12-4/WTpooled | 0.65574 | 0.581 |
IL1-4/WTpooled | 1.20519 | 1 |
WT/WTpooled | 0.98746 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.91455 | 0.497 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.14165 | 0.692 |
DC3000/delta hrp 6h | 1.0242 | 0.95 |
DC3000/delta hrp 12h | 1.02613 | 1 |
DC3000/delta hrp 24h | 1.37844 | 0.038 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.93409 | 0.418 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.27132 | 0.254 |
Exp 36h | 1.71802 | 0.326 |
Exp 60h | 1.81682 | 0.18 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98479 | 1 |
Var 0h | 0.47691 | 1 |
Var 12h I row2-row1 | 0.92419 | 0.467 |
Var 12h NI row2-row1 | 0.88158 | 0.627 |
Var 36h I row2-row1 | 0.86154 | 0.805 |
Var 36h NI row2-row1 | 1.58678 | 1 |
Var 60h I row2-row1 | 0.88451 | 0.285 |
Var 60h NI row2-row1 | 1.03433 | 1 |
Time course 0hI-0hNI | 0.9988 | 1 |
Time course 12hI-12hNI | 1.02705 | 0.82 |
Time course 36hI-36hNI | 0.93427 | 0.25 |
Time course 60hI-60hNI | 0.67814 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86035 | 0.3 |
transgenic ySAMdc/azygous control (breaker) | 1.4908 | 0.161 |
transgenic ySAMdc/azygous control (red) | 1.49704 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.21216 | 0.08 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 2.06594 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.81857 | 1 |
Manapal/WT (break) | 0.897 | 1 |
Manapal/WT (red) | 0.58747 | 0.181 |
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