Expression of 1-1-7.1.8.21

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.94880.586
27DAP/17DAP1.165220.841
39DAP/27DAP0.921450.583
41DAP/39DAP0.907240.617
42DAP/41DAP1.110490.913
43DAP/42DAP0.83380.639
47DAP/43DAP0.975170.804
52DAP/47DAP0.926930.709
57DAP/52DAP1.149931

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.920190.262
17DAP/reference1.14040.248
27DAP/reference1.182690.067
39DAP/reference1.122680.046
41DAP/reference1.260640.014
42DAP/reference1.100840.125
43DAP/reference0.983140.785
47DAP/reference0.942780.3
52DAP/reference0.803780.099
57DAP/reference0.923470.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.694940.112
27DAP/17DAP1.329820.686
39DAP/27DAP1.501590.27
41DAP/39DAP1.063780.91
42DAP/41DAP1.663560.102
43DAP/42DAP0.713280.216
47DAP/43DAP0.927470.781
52DAP/47DAP3.444310.075
57DAP/52DAP3.360760.044
57DAP/7DAP0.23434

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.268260.062
17DAP/reference1.115610.627
27DAP/reference1.09570.804
39DAP/reference1.063691
41DAP/reference1.154420.336
42DAP/reference1.298530.174
43DAP/reference1.314160.178
47DAP/reference1.134330.732
52DAP/reference1.323250.098
57DAP/reference1.100110.308

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.002070.884
17DAP/reference1.239320.117
27DAP/reference1.121540.488
39DAP/reference1.158750.401
41DAP/reference0.814020.083
42DAP/reference0.911210.189
43DAP/reference1.269470.149
47DAP/reference1.08360.621
52DAP/reference1.179530.05
57DAP/reference1.254020.058

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.146240.422
17DAP/reference1.190120.279
27DAP/reference1.582620.031
39DAP/reference1.327970.091
41DAP/reference1.304630.016
42DAP/reference0.934030.445
43DAP/reference1.058480.949
47DAP/reference1.028820.994
52DAP/reference1.24250.649
57DAP/reference0.749230.058

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.174740.966
26DAP/20DAP9.609810.269
34DAP/26DAP4.831181
51DAP/34DAP3.040890.692
52DAP/51DAP7.548810.033
53DAP/52DAP0.726890.242
55DAP/53DAP1.22759
57DAP/55DAP0.383840.032
62DAP/57DAP1.816920.515
68DAP/62DAP0.4470.062
68DAP/14DAP0.774821

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.081980.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato0.981850.774
Immature Eggplant/Mature Eggplant1.269790.659
Ripe Pepper/Ripe Tomato0.77904
Mature Eggplant/Ripe Tomato0.769440.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.23870.877
1-1-2/M820.951511
12-2/M820.944460.955
12-4/M820.894550.358
1-3/M821.48062
2-1-1/M821.214380.689
2-1/M820.8622
2-6/M820.95911
3-2/M821.18964
4-1-1/M820.83566
4-1/M820.89539
4-3-2/M821.19685
4-3/M820.989111
5-3/M820.864430.642
6-2/M821.68997
6-3/M820.829660.916
7-1/M821.0885
7-2/M821.002031
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.119420.493
IL2-6/WTpooled1.062411
IL7-5/WTpooled0.996771
IL7-3/WTpooled1.193180.362
IL12-4/WTpooled0.897991
IL1-4/WTpooled1.160161
WT/WTpooled0.837731

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.001481

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.113810.774
DC3000/delta hrp 6h1.213950.672
DC3000/delta hrp 12h1.335561
DC3000/delta hrp 24h1.011330.84

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.080470.134
DC3000 delta B/DC3000 delta AB1.089130.491

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.292311
Exp 36h0.86830.471
Exp 60h1.097441

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.982471
Var 0h0.997531
Var 12h I row2-row10.513440.39
Var 12h NI row2-row11.053071
Var 36h I row2-row11.090351
Var 36h NI row2-row11.491181
Var 60h I row2-row10.392970.285
Var 60h NI row2-row11.222110.904
Time course 0hI-0hNI0.877420.373
Time course 12hI-12hNI1.209950.593
Time course 36hI-36hNI0.772520.114
Time course 60hI-60hNI1.024910.575

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.556830.26
transgenic ySAMdc/azygous control (breaker)0.84530.251
transgenic ySAMdc/azygous control (red)0.982551

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.937410.078

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.147070.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.522571
Manapal/WT (break)0.770831
Manapal/WT (red)0.527640.181