Expression of 1-1-7.1.8.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.44411 | 0.281 |
27DAP/17DAP | 1.20069 | 0.842 |
39DAP/27DAP | 0.89975 | 0.537 |
41DAP/39DAP | 0.94518 | 0.724 |
42DAP/41DAP | 1.05935 | 0.978 |
43DAP/42DAP | 1.25266 | 0.453 |
47DAP/43DAP | 0.97929 | 0.895 |
52DAP/47DAP | 0.98484 | 0.933 |
57DAP/52DAP | 1.01405 | 0.985 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96334 | 0.432 |
17DAP/reference | 1.15746 | 0.049 |
27DAP/reference | 1.15394 | 0.115 |
39DAP/reference | 1.3076 | 0.091 |
41DAP/reference | 1.19147 | 0.024 |
42DAP/reference | 1.02728 | 0.585 |
43DAP/reference | 1.22734 | 0.011 |
47DAP/reference | 1.26456 | 0.002 |
52DAP/reference | 1.06451 | 0.695 |
57DAP/reference | 1.06983 | 0.762 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93657 | 0.26 |
27DAP/17DAP | 1.06632 | 0.771 |
39DAP/27DAP | 1.02714 | 0.751 |
41DAP/39DAP | 0.96259 | 0.875 |
42DAP/41DAP | 1.00821 | 1 |
43DAP/42DAP | 1.12031 | 0.034 |
47DAP/43DAP | 0.9746 | 0.805 |
52DAP/47DAP | 0.97624 | 0.901 |
57DAP/52DAP | 0.9659 | 0.603 |
57DAP/7DAP | 1.01568 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87027 | 0.157 |
17DAP/reference | 0.78719 | 0.012 |
27DAP/reference | 0.91367 | 0.231 |
39DAP/reference | 1.07098 | 0.865 |
41DAP/reference | 1.06767 | 0.577 |
42DAP/reference | 1.07325 | 0.889 |
43DAP/reference | 1.11264 | 0.707 |
47DAP/reference | 1.583 | 0.045 |
52DAP/reference | 1.05359 | 1 |
57DAP/reference | 0.94677 | 0.27 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95158 | 0.374 |
17DAP/reference | 0.91232 | 0.139 |
27DAP/reference | 1.02543 | 0.765 |
39DAP/reference | 1.1088 | 0.366 |
41DAP/reference | 0.9694 | 0.373 |
42DAP/reference | 1.06693 | 0.519 |
43DAP/reference | 1.15824 | 0.293 |
47DAP/reference | 1.26927 | 0.017 |
52DAP/reference | 0.9676 | 0.433 |
57DAP/reference | 1.02176 | 0.887 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81264 | 0.197 |
17DAP/reference | 0.8568 | 0.433 |
27DAP/reference | 1.66556 | 0.447 |
39DAP/reference | 1.01033 | 0.889 |
41DAP/reference | 0.92025 | 0.417 |
42DAP/reference | 1.39825 | 0.072 |
43DAP/reference | 0.98259 | 0.614 |
47DAP/reference | 1.37278 | 0.077 |
52DAP/reference | 1.10872 | 0.609 |
57DAP/reference | 1.46184 | 0.021 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04585 | 0.966 |
26DAP/20DAP | 1.0248 | 1 |
34DAP/26DAP | 1.03287 | 0.819 |
51DAP/34DAP | 0.96209 | 0.743 |
52DAP/51DAP | 0.96262 | 1 |
53DAP/52DAP | 1.03565 | 0.901 |
55DAP/53DAP | 0.94204 | 0.852 |
57DAP/55DAP | 0.8729 | 0.532 |
62DAP/57DAP | 1.10427 | 0.902 |
68DAP/62DAP | 1.54244 | 0.135 |
68DAP/14DAP | 1.543 | 0.057 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.07633 | 0.591 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8294 | 0.286 |
Mature Green Tomato/Ripe Tomato | 0.61435 | 0.377 |
Immature Eggplant/Mature Eggplant | 1.97536 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.68446 | 0.258 |
Mature Eggplant/Ripe Tomato | 0.78854 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.07921 | 1 |
1-1-2/M82 | 1.13913 | 1 |
12-2/M82 | 1.49068 | 1 |
12-4/M82 | 1.03386 | 1 |
1-3/M82 | 1.25333 | 0.479 |
2-1-1/M82 | 1.0596 | 1 |
2-1/M82 | 0.82145 | 0.345 |
2-6/M82 | 0.92717 | 1 |
3-2/M82 | 0.94078 | 0.455 |
4-1-1/M82 | 1.00838 | 1 |
4-1/M82 | 0.92365 | 1 |
4-3-2/M82 | 0.92125 | 1 |
4-3/M82 | 1.54103 | 1 |
5-3/M82 | 0.83907 | 0.642 |
6-2/M82 | 1.03963 | 1 |
6-3/M82 | 0.84606 | 1 |
7-1/M82 | 0.804 | 0.803 |
7-2/M82 | 0.90751 | 0.57 |
9-3-2/M82 | 0.9399 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.97119 | 1 |
IL2-6/WTpooled | 1.08462 | 0.395 |
IL7-5/WTpooled | 0.93684 | 1 |
IL7-3/WTpooled | 1.19692 | 1 |
IL12-4/WTpooled | 0.69536 | 0.554 |
IL1-4/WTpooled | 0.90576 | 0.699 |
WT/WTpooled | 0.84053 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.02296 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.93248 | 1 |
DC3000/delta hrp 6h | 1.218 | 1 |
DC3000/delta hrp 12h | 1.10887 | 1 |
DC3000/delta hrp 24h | 0.86413 | 0.159 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.03487 | 0.648 |
DC3000 delta B/DC3000 delta AB | 0.99924 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02925 | 1 |
Exp 36h | 0.94769 | 0.82 |
Exp 60h | 1.02776 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.99857 | 1 |
Var 0h | 0.91972 | 0.782 |
Var 12h I row2-row1 | 1.18575 | 0.196 |
Var 12h NI row2-row1 | 0.9361 | 0.627 |
Var 36h I row2-row1 | 0.87416 | 0.575 |
Var 36h NI row2-row1 | 0.91095 | 0.706 |
Var 60h I row2-row1 | 1.07197 | 0.562 |
Var 60h NI row2-row1 | 1.11195 | 0.904 |
Time course 0hI-0hNI | 1.06678 | 0.799 |
Time course 12hI-12hNI | 1.03117 | 0.785 |
Time course 36hI-36hNI | 1.01409 | 0.722 |
Time course 60hI-60hNI | 1.16316 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8878 | 0.377 |
transgenic ySAMdc/azygous control (breaker) | 1.06911 | 1 |
transgenic ySAMdc/azygous control (red) | 0.85772 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.06096 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.16316 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.05136 | 0.307 |
Manapal/WT (break) | 0.65029 | 0.333 |
Manapal/WT (red) | 1.03851 | 1 |
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