Expression of 1-1-7.1.8.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.444110.281
27DAP/17DAP1.200690.842
39DAP/27DAP0.899750.537
41DAP/39DAP0.945180.724
42DAP/41DAP1.059350.978
43DAP/42DAP1.252660.453
47DAP/43DAP0.979290.895
52DAP/47DAP0.984840.933
57DAP/52DAP1.014050.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.963340.432
17DAP/reference1.157460.049
27DAP/reference1.153940.115
39DAP/reference1.30760.091
41DAP/reference1.191470.024
42DAP/reference1.027280.585
43DAP/reference1.227340.011
47DAP/reference1.264560.002
52DAP/reference1.064510.695
57DAP/reference1.069830.762

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.936570.26
27DAP/17DAP1.066320.771
39DAP/27DAP1.027140.751
41DAP/39DAP0.962590.875
42DAP/41DAP1.008211
43DAP/42DAP1.120310.034
47DAP/43DAP0.97460.805
52DAP/47DAP0.976240.901
57DAP/52DAP0.96590.603
57DAP/7DAP1.015681

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.870270.157
17DAP/reference0.787190.012
27DAP/reference0.913670.231
39DAP/reference1.070980.865
41DAP/reference1.067670.577
42DAP/reference1.073250.889
43DAP/reference1.112640.707
47DAP/reference1.5830.045
52DAP/reference1.053591
57DAP/reference0.946770.27

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.951580.374
17DAP/reference0.912320.139
27DAP/reference1.025430.765
39DAP/reference1.10880.366
41DAP/reference0.96940.373
42DAP/reference1.066930.519
43DAP/reference1.158240.293
47DAP/reference1.269270.017
52DAP/reference0.96760.433
57DAP/reference1.021760.887

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.812640.197
17DAP/reference0.85680.433
27DAP/reference1.665560.447
39DAP/reference1.010330.889
41DAP/reference0.920250.417
42DAP/reference1.398250.072
43DAP/reference0.982590.614
47DAP/reference1.372780.077
52DAP/reference1.108720.609
57DAP/reference1.461840.021

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.045850.966
26DAP/20DAP1.02481
34DAP/26DAP1.032870.819
51DAP/34DAP0.962090.743
52DAP/51DAP0.962621
53DAP/52DAP1.035650.901
55DAP/53DAP0.942040.852
57DAP/55DAP0.87290.532
62DAP/57DAP1.104270.902
68DAP/62DAP1.542440.135
68DAP/14DAP1.5430.057

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.076330.591

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.82940.286
Mature Green Tomato/Ripe Tomato0.614350.377
Immature Eggplant/Mature Eggplant1.975360.05
Ripe Pepper/Ripe Tomato2.684460.258
Mature Eggplant/Ripe Tomato0.788541

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.079211
1-1-2/M821.139131
12-2/M821.490681
12-4/M821.033861
1-3/M821.253330.479
2-1-1/M821.05961
2-1/M820.821450.345
2-6/M820.927171
3-2/M820.940780.455
4-1-1/M821.008381
4-1/M820.923651
4-3-2/M820.921251
4-3/M821.541031
5-3/M820.839070.642
6-2/M821.039631
6-3/M820.846061
7-1/M820.8040.803
7-2/M820.907510.57
9-3-2/M820.93990.449

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.971191
IL2-6/WTpooled1.084620.395
IL7-5/WTpooled0.936841
IL7-3/WTpooled1.196921
IL12-4/WTpooled0.695360.554
IL1-4/WTpooled0.905760.699
WT/WTpooled0.840531

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.022961

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.932481
DC3000/delta hrp 6h1.2181
DC3000/delta hrp 12h1.108871
DC3000/delta hrp 24h0.864130.159

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.034870.648
DC3000 delta B/DC3000 delta AB0.999241

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.029251
Exp 36h0.947690.82
Exp 60h1.027761

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.998571
Var 0h0.919720.782
Var 12h I row2-row11.185750.196
Var 12h NI row2-row10.93610.627
Var 36h I row2-row10.874160.575
Var 36h NI row2-row10.910950.706
Var 60h I row2-row11.071970.562
Var 60h NI row2-row11.111950.904
Time course 0hI-0hNI1.066780.799
Time course 12hI-12hNI1.031170.785
Time course 36hI-36hNI1.014090.722
Time course 60hI-60hNI1.163160.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.88780.377
transgenic ySAMdc/azygous control (breaker)1.069111
transgenic ySAMdc/azygous control (red)0.857721

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.060960.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.163160.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.051360.307
Manapal/WT (break)0.650290.333
Manapal/WT (red)1.038511