Expression of 1-1-7.1.8.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10202 | 0.786 |
27DAP/17DAP | 1.13803 | 0.88 |
39DAP/27DAP | 0.9625 | 0.719 |
41DAP/39DAP | 0.935 | 0.706 |
42DAP/41DAP | 1.32714 | 0.573 |
43DAP/42DAP | 1.21118 | 0.885 |
47DAP/43DAP | 1.1176 | 0.856 |
52DAP/47DAP | 1.11496 | 0.787 |
57DAP/52DAP | 1.10359 | 0.969 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25349 | 0.162 |
17DAP/reference | 1.13957 | 0.122 |
27DAP/reference | 1.02153 | 0.996 |
39DAP/reference | 1.12414 | 0.423 |
41DAP/reference | 1.09732 | 0.312 |
42DAP/reference | 1.06878 | 0.264 |
43DAP/reference | 1.10345 | 0.095 |
47DAP/reference | 1.02338 | 0.764 |
52DAP/reference | 1.00817 | 0.768 |
57DAP/reference | 1.07366 | 0.564 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00199 | 0.871 |
27DAP/17DAP | 1.00067 | 0.943 |
39DAP/27DAP | 0.89448 | 0.502 |
41DAP/39DAP | 0.96541 | 0.934 |
42DAP/41DAP | 0.85831 | 0.243 |
43DAP/42DAP | 1.28044 | 0.086 |
47DAP/43DAP | 1.00852 | 0.99 |
52DAP/47DAP | 0.76389 | 0.251 |
57DAP/52DAP | 1.04261 | 0.858 |
57DAP/7DAP | 1.55161 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15416 | 0.205 |
17DAP/reference | 0.91037 | 0.389 |
27DAP/reference | 0.92111 | 0.303 |
39DAP/reference | 1.14312 | 1 |
41DAP/reference | 1.0275 | 0.848 |
42DAP/reference | 1.12579 | 0.686 |
43DAP/reference | 1.25592 | 0.024 |
47DAP/reference | 1.1291 | 0.493 |
52DAP/reference | 1.27965 | 0.229 |
57DAP/reference | 1.18591 | 0.232 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08043 | 0.319 |
17DAP/reference | 1.0277 | 0.999 |
27DAP/reference | 1.11817 | 0.171 |
39DAP/reference | 0.95811 | 0.416 |
41DAP/reference | 1.19646 | 0.052 |
42DAP/reference | 0.96978 | 0.355 |
43DAP/reference | 1.04522 | 0.817 |
47DAP/reference | 1.07032 | 0.301 |
52DAP/reference | 0.97056 | 0.469 |
57DAP/reference | 1.01804 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07602 | 0.903 |
17DAP/reference | 0.90881 | 0.417 |
27DAP/reference | 1.15144 | 0.531 |
39DAP/reference | 1.13445 | 0.65 |
41DAP/reference | 0.69844 | 0.293 |
42DAP/reference | 1.31266 | 0.382 |
43DAP/reference | 0.9825 | 0.685 |
47DAP/reference | 0.97633 | 0.538 |
52DAP/reference | 0.84231 | 0.174 |
57DAP/reference | 1.10806 | 0.57 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97474 | 1 |
26DAP/20DAP | 1.00933 | 1 |
34DAP/26DAP | 1.01345 | 1 |
51DAP/34DAP | 0.85461 | 0.311 |
52DAP/51DAP | 1.0788 | 0.77 |
53DAP/52DAP | 1.12994 | 0.58 |
55DAP/53DAP | 0.94145 | 0.592 |
57DAP/55DAP | 0.99557 | 0.819 |
62DAP/57DAP | 0.63396 | 0.162 |
68DAP/62DAP | 1.1758 | 0.944 |
68DAP/14DAP | 0.66056 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.02448 | 0.908 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.87431 | |
Mature Green Tomato/Ripe Tomato | 1.59486 | 0.209 |
Immature Eggplant/Mature Eggplant | 1.11968 | 0.288 |
Ripe Pepper/Ripe Tomato | 0.87425 | |
Mature Eggplant/Ripe Tomato | 1.25498 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.99468 | 0.961 |
1-1-2/M82 | 0.97214 | 1 |
12-2/M82 | 1.09636 | 1 |
12-4/M82 | 0.86501 | 0.619 |
1-3/M82 | 1.76224 | 0.479 |
2-1-1/M82 | 1.03038 | 1 |
2-1/M82 | 0.75797 | |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.06111 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.84417 | 1 |
4-3-2/M82 | 1.05959 | 1 |
4-3/M82 | 0.99679 | 1 |
5-3/M82 | 1.16792 | 0.496 |
6-2/M82 | 1.09167 | |
6-3/M82 | 0.89202 | |
7-1/M82 | 1.01969 | 1 |
7-2/M82 | 1.15023 | 1 |
9-3-2/M82 | 1.0792 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.53094 | |
IL1-4/WTpooled | 1.13966 | |
WT/WTpooled | 0.99717 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.15374 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.04059 | 0.921 |
DC3000/delta hrp 6h | 0.88551 | 0.95 |
DC3000/delta hrp 12h | 0.98482 | 1 |
DC3000/delta hrp 24h | 1.33101 | 0.202 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.87694 | 0.483 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.99684 | 1 |
Exp 36h | 0.98619 | 1 |
Exp 60h | 1.15565 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03443 | 1 |
Var 0h | 4.38446 | 0.936 |
Var 12h I row2-row1 | 1.03858 | 0.736 |
Var 12h NI row2-row1 | 1.14284 | 0.161 |
Var 36h I row2-row1 | 1.09127 | 0.309 |
Var 36h NI row2-row1 | 0.73523 | 0.522 |
Var 60h I row2-row1 | 1.2061 | 0.562 |
Var 60h NI row2-row1 | 0.85008 | 0.483 |
Time course 0hI-0hNI | 0.9917 | 1 |
Time course 12hI-12hNI | 1.03441 | 0.779 |
Time course 36hI-36hNI | 1.0637 | 0.355 |
Time course 60hI-60hNI | 1.10428 | 0.359 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98697 | 0.722 |
transgenic ySAMdc/azygous control (breaker) | 1.09335 | 1 |
transgenic ySAMdc/azygous control (red) | 0.90834 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.07023 | 0.071 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.14091 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.75558 | 0.172 |
Manapal/WT (break) | 0.86516 | 1 |
Manapal/WT (red) | 0.81884 | 0.181 |
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