Expression of 1-1-7.1.8.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.102020.786
27DAP/17DAP1.138030.88
39DAP/27DAP0.96250.719
41DAP/39DAP0.9350.706
42DAP/41DAP1.327140.573
43DAP/42DAP1.211180.885
47DAP/43DAP1.11760.856
52DAP/47DAP1.114960.787
57DAP/52DAP1.103590.969

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.253490.162
17DAP/reference1.139570.122
27DAP/reference1.021530.996
39DAP/reference1.124140.423
41DAP/reference1.097320.312
42DAP/reference1.068780.264
43DAP/reference1.103450.095
47DAP/reference1.023380.764
52DAP/reference1.008170.768
57DAP/reference1.073660.564

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.001990.871
27DAP/17DAP1.000670.943
39DAP/27DAP0.894480.502
41DAP/39DAP0.965410.934
42DAP/41DAP0.858310.243
43DAP/42DAP1.280440.086
47DAP/43DAP1.008520.99
52DAP/47DAP0.763890.251
57DAP/52DAP1.042610.858
57DAP/7DAP1.551611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.154160.205
17DAP/reference0.910370.389
27DAP/reference0.921110.303
39DAP/reference1.143121
41DAP/reference1.02750.848
42DAP/reference1.125790.686
43DAP/reference1.255920.024
47DAP/reference1.12910.493
52DAP/reference1.279650.229
57DAP/reference1.185910.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080430.319
17DAP/reference1.02770.999
27DAP/reference1.118170.171
39DAP/reference0.958110.416
41DAP/reference1.196460.052
42DAP/reference0.969780.355
43DAP/reference1.045220.817
47DAP/reference1.070320.301
52DAP/reference0.970560.469
57DAP/reference1.018040.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076020.903
17DAP/reference0.908810.417
27DAP/reference1.151440.531
39DAP/reference1.134450.65
41DAP/reference0.698440.293
42DAP/reference1.312660.382
43DAP/reference0.98250.685
47DAP/reference0.976330.538
52DAP/reference0.842310.174
57DAP/reference1.108060.57

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.974741
26DAP/20DAP1.009331
34DAP/26DAP1.013451
51DAP/34DAP0.854610.311
52DAP/51DAP1.07880.77
53DAP/52DAP1.129940.58
55DAP/53DAP0.941450.592
57DAP/55DAP0.995570.819
62DAP/57DAP0.633960.162
68DAP/62DAP1.17580.944
68DAP/14DAP0.660560.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.024480.908

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.87431
Mature Green Tomato/Ripe Tomato1.594860.209
Immature Eggplant/Mature Eggplant1.119680.288
Ripe Pepper/Ripe Tomato0.87425
Mature Eggplant/Ripe Tomato1.254980.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.994680.961
1-1-2/M820.972141
12-2/M821.096361
12-4/M820.865010.619
1-3/M821.762240.479
2-1-1/M821.030381
2-1/M820.75797
2-6/M82N/AN/A
3-2/M821.06111
4-1-1/M82N/AN/A
4-1/M820.844171
4-3-2/M821.059591
4-3/M820.996791
5-3/M821.167920.496
6-2/M821.09167
6-3/M820.89202
7-1/M821.019691
7-2/M821.150231
9-3-2/M821.07921

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooledN/AN/A
IL7-5/WTpooledN/AN/A
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.53094
IL1-4/WTpooled1.13966
WT/WTpooled0.99717

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.153740.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.040590.921
DC3000/delta hrp 6h0.885510.95
DC3000/delta hrp 12h0.984821
DC3000/delta hrp 24h1.331010.202

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB0.876940.483

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.996841
Exp 36h0.986191
Exp 60h1.155650.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.034431
Var 0h4.384460.936
Var 12h I row2-row11.038580.736
Var 12h NI row2-row11.142840.161
Var 36h I row2-row11.091270.309
Var 36h NI row2-row10.735230.522
Var 60h I row2-row11.20610.562
Var 60h NI row2-row10.850080.483
Time course 0hI-0hNI0.99171
Time course 12hI-12hNI1.034410.779
Time course 36hI-36hNI1.06370.355
Time course 60hI-60hNI1.104280.359

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.986970.722
transgenic ySAMdc/azygous control (breaker)1.093351
transgenic ySAMdc/azygous control (red)0.908341

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.070230.071

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.140911

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.755580.172
Manapal/WT (break)0.865161
Manapal/WT (red)0.818840.181