Expression of 1-1-7.1.9.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 2.15013 | 0.224 |
27DAP/17DAP | 0.88911 | 0.746 |
39DAP/27DAP | 1.32485 | 0.425 |
41DAP/39DAP | 0.88923 | 0.636 |
42DAP/41DAP | 0.88827 | 1 |
43DAP/42DAP | 1.4069 | 0.703 |
47DAP/43DAP | 0.6785 | 0.18 |
52DAP/47DAP | 1.49348 | 0.538 |
57DAP/52DAP | 0.88925 | 0.918 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.47321 | |
17DAP/reference | 1.10478 | 0.843 |
27DAP/reference | 0.53521 | 0.013 |
39DAP/reference | 0.68739 | 0.234 |
41DAP/reference | 1.37935 | 0.241 |
42DAP/reference | N/A | N/A |
43DAP/reference | 1.0566 | 0.942 |
47DAP/reference | 0.72572 | 0.018 |
52DAP/reference | 1.16503 | |
57DAP/reference | N/A | N/A |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.24413 | 0.87 |
27DAP/17DAP | 0.54283 | |
39DAP/27DAP | N/A | N/A |
41DAP/39DAP | 1.04999 | |
42DAP/41DAP | 1.25237 | 0.887 |
43DAP/42DAP | N/A | N/A |
47DAP/43DAP | 2.24181 | 0.857 |
52DAP/47DAP | 0.70561 | 0.338 |
57DAP/52DAP | 2.58757 | |
57DAP/7DAP | 4.39296 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.64148 | 0.295 |
27DAP/reference | N/A | N/A |
39DAP/reference | 2.15493 | |
41DAP/reference | 0.81893 | |
42DAP/reference | 1.58342 | |
43DAP/reference | N/A | N/A |
47DAP/reference | 0.7633 | 0.504 |
52DAP/reference | N/A | N/A |
57DAP/reference | 1.80575 | |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.73749 | 0.022 |
17DAP/reference | 0.86635 | 0.337 |
27DAP/reference | 0.46515 | 0.014 |
39DAP/reference | 1.35964 | 1 |
41DAP/reference | 0.77692 | 0.173 |
42DAP/reference | 1.01819 | 1 |
43DAP/reference | 1.08573 | 0.719 |
47DAP/reference | 1.35519 | 0.916 |
52DAP/reference | 1.14326 | 1 |
57DAP/reference | 1.56481 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.36159 | |
17DAP/reference | 1.53496 | |
27DAP/reference | N/A | N/A |
39DAP/reference | 0.63122 | |
41DAP/reference | N/A | N/A |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.67914 | 0.031 |
52DAP/reference | 0.96124 | |
57DAP/reference | N/A | N/A |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.68299 | 0.966 |
26DAP/20DAP | 1.17516 | |
34DAP/26DAP | 0.79178 | 0.682 |
51DAP/34DAP | 1.27838 | 0.967 |
52DAP/51DAP | N/A | N/A |
53DAP/52DAP | 1.07008 | 0.921 |
55DAP/53DAP | 1.24118 | 0.951 |
57DAP/55DAP | 1.45287 | 0.474 |
62DAP/57DAP | N/A | N/A |
68DAP/62DAP | N/A | N/A |
68DAP/14DAP | 0.92318 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | N/A | N/A |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 4.98241 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.98003 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.06748 | 1 |
IL12-4/WTpooled | 1.08705 | 0.557 |
IL1-4/WTpooled | 0.93528 | |
WT/WTpooled | 1.0937 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | N/A | N/A |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.67621 | 0.237 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12353 | 0.525 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02306 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.3927 | 0.413 |
|
|