Expression of 1-1-7.1.9.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP2.150130.224
27DAP/17DAP0.889110.746
39DAP/27DAP1.324850.425
41DAP/39DAP0.889230.636
42DAP/41DAP0.888271
43DAP/42DAP1.40690.703
47DAP/43DAP0.67850.18
52DAP/47DAP1.493480.538
57DAP/52DAP0.889250.918

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.47321
17DAP/reference1.104780.843
27DAP/reference0.535210.013
39DAP/reference0.687390.234
41DAP/reference1.379350.241
42DAP/referenceN/AN/A
43DAP/reference1.05660.942
47DAP/reference0.725720.018
52DAP/reference1.16503
57DAP/referenceN/AN/A

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.244130.87
27DAP/17DAP0.54283
39DAP/27DAPN/AN/A
41DAP/39DAP1.04999
42DAP/41DAP1.252370.887
43DAP/42DAPN/AN/A
47DAP/43DAP2.241810.857
52DAP/47DAP0.705610.338
57DAP/52DAP2.58757
57DAP/7DAP4.39296

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.641480.295
27DAP/referenceN/AN/A
39DAP/reference2.15493
41DAP/reference0.81893
42DAP/reference1.58342
43DAP/referenceN/AN/A
47DAP/reference0.76330.504
52DAP/referenceN/AN/A
57DAP/reference1.80575

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.737490.022
17DAP/reference0.866350.337
27DAP/reference0.465150.014
39DAP/reference1.359641
41DAP/reference0.776920.173
42DAP/reference1.018191
43DAP/reference1.085730.719
47DAP/reference1.355190.916
52DAP/reference1.143261
57DAP/reference1.564811

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.36159
17DAP/reference1.53496
27DAP/referenceN/AN/A
39DAP/reference0.63122
41DAP/referenceN/AN/A
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference1.679140.031
52DAP/reference0.96124
57DAP/referenceN/AN/A

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.682990.966
26DAP/20DAP1.17516
34DAP/26DAP0.791780.682
51DAP/34DAP1.278380.967
52DAP/51DAPN/AN/A
53DAP/52DAP1.070080.921
55DAP/53DAP1.241180.951
57DAP/55DAP1.452870.474
62DAP/57DAPN/AN/A
68DAP/62DAPN/AN/A
68DAP/14DAP0.92318

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper BreakerN/AN/A

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato4.982410.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.980031
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.067481
IL12-4/WTpooled1.087050.557
IL1-4/WTpooled0.93528
WT/WTpooled1.09370.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.676210.237
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.123530.525

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.023061

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.39270.413