Expression of 1-1-7.1.9.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.616040.67
27DAP/17DAP0.806920.499
39DAP/27DAP0.962550.719
41DAP/39DAP1.060660.954
42DAP/41DAP0.972431
43DAP/42DAP1.14761
47DAP/43DAP1.007480.876
52DAP/47DAP1.109490.957
57DAP/52DAP0.961280.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.239790.611
17DAP/reference0.76318
27DAP/reference0.677970.036
39DAP/reference1.02479
41DAP/reference1.177851
42DAP/reference0.69395
43DAP/reference0.72060.538
47DAP/reference0.837630.005
52DAP/referenceN/AN/A
57DAP/reference0.76387

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.5446
27DAP/17DAP0.84061
39DAP/27DAPN/AN/A
41DAP/39DAPN/AN/A
42DAP/41DAP1.384930.935
43DAP/42DAP0.7513
47DAP/43DAP0.67333
52DAP/47DAP2.77604
57DAP/52DAP1.66586
57DAP/7DAP0.905791

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.32911
17DAP/referenceN/AN/A
27DAP/reference0.36402
39DAP/referenceN/AN/A
41DAP/reference1.03497
42DAP/reference0.75898
43DAP/referenceN/AN/A
47DAP/referenceN/AN/A
52DAP/referenceN/AN/A
57DAP/reference2.00929

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/reference0.981440.642
27DAP/reference0.749440.269
39DAP/reference0.83209
41DAP/reference0.520.087
42DAP/reference0.845510.098
43DAP/reference0.60993
47DAP/reference0.65004
52DAP/reference1.321240.023
57DAP/reference1.125790.868

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.36455
17DAP/reference1.6168
27DAP/reference0.7014
39DAP/referenceN/AN/A
41DAP/reference0.942870.682
42DAP/referenceN/AN/A
43DAP/referenceN/AN/A
47DAP/reference1.637560.025
52DAP/referenceN/AN/A
57DAP/reference0.8450.444

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.23716
26DAP/20DAP1.67442
34DAP/26DAP1.64793
51DAP/34DAP1.17310.759
52DAP/51DAP2.97494
53DAP/52DAP1.829740.517
55DAP/53DAP0.950430.775
57DAP/55DAP0.84472
62DAP/57DAP1.208620.002
68DAP/62DAP1.866860.095
68DAP/14DAP0.55625

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.69260.031

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.219790.277
IL2-6/WTpooled0.848071
IL7-5/WTpooled1.327840.792
IL7-3/WTpooled1.156590.362
IL12-4/WTpooled1.202190.523
IL1-4/WTpooled1.036281
WT/WTpooled1.029521

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.37463
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.584110.196
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control19.20360.119

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)N/AN/A
Manapal/WT (red)N/AN/A