Expression of 1-1-7.1.9.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.61604 | 0.67 |
27DAP/17DAP | 0.80692 | 0.499 |
39DAP/27DAP | 0.96255 | 0.719 |
41DAP/39DAP | 1.06066 | 0.954 |
42DAP/41DAP | 0.97243 | 1 |
43DAP/42DAP | 1.1476 | 1 |
47DAP/43DAP | 1.00748 | 0.876 |
52DAP/47DAP | 1.10949 | 0.957 |
57DAP/52DAP | 0.96128 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.23979 | 0.611 |
17DAP/reference | 0.76318 | |
27DAP/reference | 0.67797 | 0.036 |
39DAP/reference | 1.02479 | |
41DAP/reference | 1.17785 | 1 |
42DAP/reference | 0.69395 | |
43DAP/reference | 0.7206 | 0.538 |
47DAP/reference | 0.83763 | 0.005 |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.76387 | |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.5446 | |
27DAP/17DAP | 0.84061 | |
39DAP/27DAP | N/A | N/A |
41DAP/39DAP | N/A | N/A |
42DAP/41DAP | 1.38493 | 0.935 |
43DAP/42DAP | 0.7513 | |
47DAP/43DAP | 0.67333 | |
52DAP/47DAP | 2.77604 | |
57DAP/52DAP | 1.66586 | |
57DAP/7DAP | 0.90579 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.32911 | |
17DAP/reference | N/A | N/A |
27DAP/reference | 0.36402 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 1.03497 | |
42DAP/reference | 0.75898 | |
43DAP/reference | N/A | N/A |
47DAP/reference | N/A | N/A |
52DAP/reference | N/A | N/A |
57DAP/reference | 2.00929 | |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | N/A | N/A |
17DAP/reference | 0.98144 | 0.642 |
27DAP/reference | 0.74944 | 0.269 |
39DAP/reference | 0.83209 | |
41DAP/reference | 0.52 | 0.087 |
42DAP/reference | 0.84551 | 0.098 |
43DAP/reference | 0.60993 | |
47DAP/reference | 0.65004 | |
52DAP/reference | 1.32124 | 0.023 |
57DAP/reference | 1.12579 | 0.868 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.36455 | |
17DAP/reference | 1.6168 | |
27DAP/reference | 0.7014 | |
39DAP/reference | N/A | N/A |
41DAP/reference | 0.94287 | 0.682 |
42DAP/reference | N/A | N/A |
43DAP/reference | N/A | N/A |
47DAP/reference | 1.63756 | 0.025 |
52DAP/reference | N/A | N/A |
57DAP/reference | 0.845 | 0.444 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.23716 | |
26DAP/20DAP | 1.67442 | |
34DAP/26DAP | 1.64793 | |
51DAP/34DAP | 1.1731 | 0.759 |
52DAP/51DAP | 2.97494 | |
53DAP/52DAP | 1.82974 | 0.517 |
55DAP/53DAP | 0.95043 | 0.775 |
57DAP/55DAP | 0.84472 | |
62DAP/57DAP | 1.20862 | 0.002 |
68DAP/62DAP | 1.86686 | 0.095 |
68DAP/14DAP | 0.55625 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.6926 | 0.031 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | N/A | N/A |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | N/A | N/A |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | N/A | N/A |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.21979 | 0.277 |
IL2-6/WTpooled | 0.84807 | 1 |
IL7-5/WTpooled | 1.32784 | 0.792 |
IL7-3/WTpooled | 1.15659 | 0.362 |
IL12-4/WTpooled | 1.20219 | 0.523 |
IL1-4/WTpooled | 1.03628 | 1 |
WT/WTpooled | 1.02952 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | N/A | N/A |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | N/A | N/A |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.37463 | |
DC3000/delta hrp 24h | N/A | N/A |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.58411 | 0.196 |
Var 12h I row2-row1 | N/A | N/A |
Var 12h NI row2-row1 | N/A | N/A |
Var 36h I row2-row1 | N/A | N/A |
Var 36h NI row2-row1 | N/A | N/A |
Var 60h I row2-row1 | N/A | N/A |
Var 60h NI row2-row1 | N/A | N/A |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | N/A | N/A |
Time course 36hI-36hNI | N/A | N/A |
Time course 60hI-60hNI | N/A | N/A |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | N/A | N/A |
transgenic ySAMdc/azygous control (red) | N/A | N/A |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 19.2036 | 0.119 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | N/A | N/A |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | N/A | N/A |
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