Expression of 1-1-7.1.9.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.029140.839
27DAP/17DAP1.576210.625
39DAP/27DAP0.782820.482
41DAP/39DAP1.376870.797
42DAP/41DAP1.069730.949
43DAP/42DAP1.71690.507
47DAP/43DAP1.072560.966
52DAP/47DAP0.875180.639
57DAP/52DAP0.869540.889

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.872880.063
17DAP/reference1.196580.051
27DAP/reference1.021690.934
39DAP/reference1.050090.722
41DAP/reference1.130440.111
42DAP/reference0.985230.469
43DAP/reference1.068750.202
47DAP/reference0.899890.116
52DAP/reference0.922120.292
57DAP/reference0.947920.435

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.552770.5
27DAP/17DAP1.251380.233
39DAP/27DAP1.015811
41DAP/39DAP1.085150.861
42DAP/41DAP1.189930.783
43DAP/42DAP1.015121
47DAP/43DAP1.010680.99
52DAP/47DAP1.079360.81
57DAP/52DAP1.280310.374
57DAP/7DAP1.166881

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.147990.393
17DAP/reference1.406590.022
27DAP/reference1.336780.012
39DAP/reference1.156810.149
41DAP/reference1.262390.171
42DAP/reference1.195290.308
43DAP/reference1.630430.023
47DAP/reference1.066480.761
52DAP/reference1.084840.636
57DAP/reference1.125620.158

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.027260.66
17DAP/reference1.085070.437
27DAP/reference0.956930.452
39DAP/reference0.978680.509
41DAP/reference1.030371
42DAP/reference0.839170.061
43DAP/reference1.211760.485
47DAP/reference0.915770.107
52DAP/reference1.019471
57DAP/reference1.293520.324

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.202670.19
17DAP/reference1.120870.65
27DAP/reference1.398490.028
39DAP/reference1.250850.013
41DAP/reference1.537220.013
42DAP/reference1.132170.54
43DAP/reference1.091541
47DAP/reference1.024780.731
52DAP/reference1.948150.209
57DAP/reference0.94770.394

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.023690.966
26DAP/20DAP1.366280.512
34DAP/26DAP0.959330.972
51DAP/34DAP1.354870.108
52DAP/51DAP1.028091
53DAP/52DAP1.139540.712
55DAP/53DAP0.787080.048
57DAP/55DAP0.839130.508
62DAP/57DAP1.069261
68DAP/62DAP0.851030.609
68DAP/14DAP0.738280.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.102850.821

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.46108
Mature Eggplant/Ripe Tomato1.979990.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.960560.883
1-1-2/M820.844930.754
12-2/M820.954030.955
12-4/M821.010711
1-3/M820.885390.501
2-1-1/M821.084781
2-1/M821.055511
2-6/M821.052330.505
3-2/M821.0283
4-1-1/M820.982581
4-1/M821.00898
4-3-2/M821.03808
4-3/M820.896741
5-3/M820.936611
6-2/M821.077651
6-3/M821.012861
7-1/M820.965170.443
7-2/M821.078090.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.079190.788
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.82581
IL12-4/WTpooled1.097560.695
IL1-4/WTpooled0.96904
WT/WTpooled1.13911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.987731

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.985441
DC3000/delta hrp 6h0.736960.95
DC3000/delta hrp 12h0.975251
DC3000/delta hrp 24h1.13560.271

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.062381
Exp 36hN/AN/A
Exp 60h1.045381

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.02691
Var 0h0.981921
Var 12h I row2-row11.210650.283
Var 12h NI row2-row11.124341
Var 36h I row2-row11.085490.41
Var 36h NI row2-row10.947760.791
Var 60h I row2-row11.209191
Var 60h NI row2-row11.167880.375
Time course 0hI-0hNI0.880770.411
Time course 12hI-12hNI1.121640.603
Time course 36hI-36hNI0.916380.25
Time course 60hI-60hNI0.505330.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.093090.321
transgenic ySAMdc/azygous control (breaker)0.944080.251
transgenic ySAMdc/azygous control (red)1.002311

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.968860.256

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.812220.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.42910.096
Manapal/WT (break)1.290370.13
Manapal/WT (red)1.046481