Expression of 1-1-7.1.9.2

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.310540.336
27DAP/17DAP0.958030.939
39DAP/27DAP1.012460.769
41DAP/39DAP1.158110.722
42DAP/41DAP1.06111
43DAP/42DAP0.940150.867
47DAP/43DAP0.939070.768
52DAP/47DAP1.55260.498
57DAP/52DAP0.865930.55

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.946280.317
17DAP/reference0.980940.63
27DAP/reference1.022970.88
39DAP/reference1.035460.593
41DAP/reference1.004721
42DAP/reference1.006911
43DAP/reference1.10250.36
47DAP/reference0.985120.445
52DAP/reference0.91320.147
57DAP/reference0.883720.056

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.055430.728
27DAP/17DAP0.936550.684
39DAP/27DAP1.006020.862
41DAP/39DAP0.93640.839
42DAP/41DAP1.101780.763
43DAP/42DAP0.972850.729
47DAP/43DAP1.035650.88
52DAP/47DAP0.924940.824
57DAP/52DAP1.021510.925
57DAP/7DAP1.269651

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.922130.183
17DAP/reference0.886070.039
27DAP/reference0.927040.033
39DAP/reference0.863110.011
41DAP/reference0.823040.036
42DAP/reference0.755750.01
43DAP/reference0.870890.044
47DAP/reference0.955890.504
52DAP/reference0.824310.033
57DAP/reference0.843030.031

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.053160.477
17DAP/reference1.010881
27DAP/reference1.027380.933
39DAP/reference1.041210.764
41DAP/reference0.978810.451
42DAP/reference0.961610.289
43DAP/reference1.101820.211
47DAP/reference1.025220.795
52DAP/reference1.009611
57DAP/reference1.08240.244

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.003950.699
17DAP/reference1.030780.72
27DAP/reference0.88230.034
39DAP/reference0.860620.024
41DAP/reference0.975820.56
42DAP/reference0.953210.361
43DAP/reference0.913440.12
47DAP/reference1.042440.877
52DAP/reference0.915370.256
57DAP/reference0.854520.042

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.028930.966
26DAP/20DAP0.999611
34DAP/26DAP1.106671
51DAP/34DAP0.871670.19
52DAP/51DAP0.980851
53DAP/52DAP1.19223
55DAP/53DAP1.015750.991
57DAP/55DAP1.291570.805
62DAP/57DAP0.979490.994
68DAP/62DAP0.985820.834
68DAP/14DAP0.880791

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.93270.443

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.529420.058
Mature Green Tomato/Ripe Tomato1.212680.881
Immature Eggplant/Mature Eggplant0.480590.062
Ripe Pepper/Ripe Tomato2.07847
Mature Eggplant/Ripe Tomato7.627060.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.063340.877
1-1-2/M820.795450.958
12-2/M821.089131
12-4/M821.128491
1-3/M820.957871
2-1-1/M821.04221
2-1/M821.013021
2-6/M821.336280.335
3-2/M820.939191
4-1-1/M821.035450.938
4-1/M821.31970.512
4-3-2/M820.924861
4-3/M820.885950.72
5-3/M820.883360.419
6-2/M820.90920.497
6-3/M821.034011
7-1/M821.21888
7-2/M820.98361
9-3-2/M821.06891

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.357610.277
IL2-6/WTpooled0.977131
IL7-5/WTpooled1.384020.792
IL7-3/WTpooled0.71973
IL12-4/WTpooled0.76481
IL1-4/WTpooled1.156511
WT/WTpooled1.07567

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.141571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.959191
DC3000/delta hrp 6h1.241411
DC3000/delta hrp 12h1.151371
DC3000/delta hrp 24h1.078240.516

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.187760.11
DC3000 delta B/DC3000 delta AB1.141650.243

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.145641
Exp 36h0.88460.82
Exp 60h0.88910.664

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.056611
Var 0h1.004831
Var 12h I row2-row11.125490.324
Var 12h NI row2-row10.946450.327
Var 36h I row2-row11.167491
Var 36h NI row2-row10.886950.61
Var 60h I row2-row11.306320.562
Var 60h NI row2-row11.04591
Time course 0hI-0hNI1.216720.377
Time course 12hI-12hNI1.038150.741
Time course 36hI-36hNI1.189950.19
Time course 60hI-60hNI0.642730.011

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.39360.331
transgenic ySAMdc/azygous control (breaker)0.28890.125
transgenic ySAMdc/azygous control (red)0.944161

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.326380.026

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.024541

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.29641
Manapal/WT (break)1.008961
Manapal/WT (red)1.027931