Expression of 1-1-7.1.9.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31054 | 0.336 |
27DAP/17DAP | 0.95803 | 0.939 |
39DAP/27DAP | 1.01246 | 0.769 |
41DAP/39DAP | 1.15811 | 0.722 |
42DAP/41DAP | 1.0611 | 1 |
43DAP/42DAP | 0.94015 | 0.867 |
47DAP/43DAP | 0.93907 | 0.768 |
52DAP/47DAP | 1.5526 | 0.498 |
57DAP/52DAP | 0.86593 | 0.55 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.94628 | 0.317 |
17DAP/reference | 0.98094 | 0.63 |
27DAP/reference | 1.02297 | 0.88 |
39DAP/reference | 1.03546 | 0.593 |
41DAP/reference | 1.00472 | 1 |
42DAP/reference | 1.00691 | 1 |
43DAP/reference | 1.1025 | 0.36 |
47DAP/reference | 0.98512 | 0.445 |
52DAP/reference | 0.9132 | 0.147 |
57DAP/reference | 0.88372 | 0.056 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.05543 | 0.728 |
27DAP/17DAP | 0.93655 | 0.684 |
39DAP/27DAP | 1.00602 | 0.862 |
41DAP/39DAP | 0.9364 | 0.839 |
42DAP/41DAP | 1.10178 | 0.763 |
43DAP/42DAP | 0.97285 | 0.729 |
47DAP/43DAP | 1.03565 | 0.88 |
52DAP/47DAP | 0.92494 | 0.824 |
57DAP/52DAP | 1.02151 | 0.925 |
57DAP/7DAP | 1.26965 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92213 | 0.183 |
17DAP/reference | 0.88607 | 0.039 |
27DAP/reference | 0.92704 | 0.033 |
39DAP/reference | 0.86311 | 0.011 |
41DAP/reference | 0.82304 | 0.036 |
42DAP/reference | 0.75575 | 0.01 |
43DAP/reference | 0.87089 | 0.044 |
47DAP/reference | 0.95589 | 0.504 |
52DAP/reference | 0.82431 | 0.033 |
57DAP/reference | 0.84303 | 0.031 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.05316 | 0.477 |
17DAP/reference | 1.01088 | 1 |
27DAP/reference | 1.02738 | 0.933 |
39DAP/reference | 1.04121 | 0.764 |
41DAP/reference | 0.97881 | 0.451 |
42DAP/reference | 0.96161 | 0.289 |
43DAP/reference | 1.10182 | 0.211 |
47DAP/reference | 1.02522 | 0.795 |
52DAP/reference | 1.00961 | 1 |
57DAP/reference | 1.0824 | 0.244 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00395 | 0.699 |
17DAP/reference | 1.03078 | 0.72 |
27DAP/reference | 0.8823 | 0.034 |
39DAP/reference | 0.86062 | 0.024 |
41DAP/reference | 0.97582 | 0.56 |
42DAP/reference | 0.95321 | 0.361 |
43DAP/reference | 0.91344 | 0.12 |
47DAP/reference | 1.04244 | 0.877 |
52DAP/reference | 0.91537 | 0.256 |
57DAP/reference | 0.85452 | 0.042 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02893 | 0.966 |
26DAP/20DAP | 0.99961 | 1 |
34DAP/26DAP | 1.10667 | 1 |
51DAP/34DAP | 0.87167 | 0.19 |
52DAP/51DAP | 0.98085 | 1 |
53DAP/52DAP | 1.19223 | |
55DAP/53DAP | 1.01575 | 0.991 |
57DAP/55DAP | 1.29157 | 0.805 |
62DAP/57DAP | 0.97949 | 0.994 |
68DAP/62DAP | 0.98582 | 0.834 |
68DAP/14DAP | 0.88079 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9327 | 0.443 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.52942 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.21268 | 0.881 |
Immature Eggplant/Mature Eggplant | 0.48059 | 0.062 |
Ripe Pepper/Ripe Tomato | 2.07847 | |
Mature Eggplant/Ripe Tomato | 7.62706 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06334 | 0.877 |
1-1-2/M82 | 0.79545 | 0.958 |
12-2/M82 | 1.08913 | 1 |
12-4/M82 | 1.12849 | 1 |
1-3/M82 | 0.95787 | 1 |
2-1-1/M82 | 1.0422 | 1 |
2-1/M82 | 1.01302 | 1 |
2-6/M82 | 1.33628 | 0.335 |
3-2/M82 | 0.93919 | 1 |
4-1-1/M82 | 1.03545 | 0.938 |
4-1/M82 | 1.3197 | 0.512 |
4-3-2/M82 | 0.92486 | 1 |
4-3/M82 | 0.88595 | 0.72 |
5-3/M82 | 0.88336 | 0.419 |
6-2/M82 | 0.9092 | 0.497 |
6-3/M82 | 1.03401 | 1 |
7-1/M82 | 1.21888 | |
7-2/M82 | 0.9836 | 1 |
9-3-2/M82 | 1.0689 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.35761 | 0.277 |
IL2-6/WTpooled | 0.97713 | 1 |
IL7-5/WTpooled | 1.38402 | 0.792 |
IL7-3/WTpooled | 0.71973 | |
IL12-4/WTpooled | 0.76481 | |
IL1-4/WTpooled | 1.15651 | 1 |
WT/WTpooled | 1.07567 | |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.14157 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95919 | 1 |
DC3000/delta hrp 6h | 1.24141 | 1 |
DC3000/delta hrp 12h | 1.15137 | 1 |
DC3000/delta hrp 24h | 1.07824 | 0.516 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.18776 | 0.11 |
DC3000 delta B/DC3000 delta AB | 1.14165 | 0.243 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.14564 | 1 |
Exp 36h | 0.8846 | 0.82 |
Exp 60h | 0.8891 | 0.664 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.05661 | 1 |
Var 0h | 1.00483 | 1 |
Var 12h I row2-row1 | 1.12549 | 0.324 |
Var 12h NI row2-row1 | 0.94645 | 0.327 |
Var 36h I row2-row1 | 1.16749 | 1 |
Var 36h NI row2-row1 | 0.88695 | 0.61 |
Var 60h I row2-row1 | 1.30632 | 0.562 |
Var 60h NI row2-row1 | 1.0459 | 1 |
Time course 0hI-0hNI | 1.21672 | 0.377 |
Time course 12hI-12hNI | 1.03815 | 0.741 |
Time course 36hI-36hNI | 1.18995 | 0.19 |
Time course 60hI-60hNI | 0.64273 | 0.011 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.3936 | 0.331 |
transgenic ySAMdc/azygous control (breaker) | 0.2889 | 0.125 |
transgenic ySAMdc/azygous control (red) | 0.94416 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.32638 | 0.026 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.02454 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.2964 | 1 |
Manapal/WT (break) | 1.00896 | 1 |
Manapal/WT (red) | 1.02793 | 1 |
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