Expression of 1-1-7.1.9.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.025730.867
27DAP/17DAP1.038411
39DAP/27DAP1.986110.305
41DAP/39DAP1.262760.535
42DAP/41DAP0.766650.774
43DAP/42DAP1.04460.937
47DAP/43DAP0.831090.433
52DAP/47DAP1.10360.895
57DAP/52DAP1.053280.995

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.083080.735
17DAP/reference1.123230.143
27DAP/reference1.260090.033
39DAP/reference1.345270.041
41DAP/reference1.072050.587
42DAP/reference1.33350.002
43DAP/reference1.452510.01
47DAP/reference1.460780.003
52DAP/reference1.331540.017
57DAP/reference1.565480.01

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.030621
27DAP/17DAP1.025030.973
39DAP/27DAP1.437370.078
41DAP/39DAP1.422580.719
42DAP/41DAP1.065811
43DAP/42DAP0.706880.049
47DAP/43DAP1.194650.318
52DAP/47DAP0.826290.3
57DAP/52DAP0.948980.541
57DAP/7DAP1.268661

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.120030.157
17DAP/reference1.116280.162
27DAP/reference1.027860.804
39DAP/reference1.270.017
41DAP/reference1.148520.232
42DAP/reference0.966310.458
43DAP/reference1.477080.012
47DAP/reference1.576060.024
52DAP/reference1.326030.025
57DAP/reference1.428070.008

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.98580.756
17DAP/reference0.839030.01
27DAP/reference1.165930.303
39DAP/reference1.19420.15
41DAP/reference1.355570.011
42DAP/reference1.2890.029
43DAP/reference1.088030.899
47DAP/reference1.471010.008
52DAP/reference0.951970.259
57DAP/reference1.08210.593

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.165330.18
17DAP/reference0.92550.417
27DAP/reference1.100570.179
39DAP/reference1.233890.037
41DAP/reference0.925270.04
42DAP/reference1.063350.55
43DAP/reference1.222260.134
47DAP/reference0.918120.24
52DAP/reference1.186190.363
57DAP/reference1.133630.121

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.053950.966
26DAP/20DAP1.198420.7
34DAP/26DAP0.986390.998
51DAP/34DAP1.033910.978
52DAP/51DAP0.819980.151
53DAP/52DAP0.954870.824
55DAP/53DAP1.014090.925
57DAP/55DAP1.206740.955
62DAP/57DAP1.089890.935
68DAP/62DAP1.219810.657
68DAP/14DAP0.846581

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.851480.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper2.007420.058
Mature Green Tomato/Ripe Tomato0.963610.66
Immature Eggplant/Mature Eggplant1.403870.05
Ripe Pepper/Ripe Tomato0.287960.224
Mature Eggplant/Ripe Tomato0.536770.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.004241
1-1-2/M821.335771
12-2/M820.97791
12-4/M821.103511
1-3/M821.68120.277
2-1-1/M821.144530.439
2-1/M821.32880.335
2-6/M821.288410.395
3-2/M821.027231
4-1-1/M821.050911
4-1/M821.136471
4-3-2/M821.518160.508
4-3/M821.357590.268
5-3/M821.112861
6-2/M821.7091
6-3/M820.87481
7-1/M821.161850.598
7-2/M821.633250.324
9-3-2/M821.579610.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.179190.365
IL2-6/WTpooled1.0421
IL7-5/WTpooled0.8335
IL7-3/WTpooled2.190970.362
IL12-4/WTpooled1.254950.483
IL1-4/WTpooled1.273781
WT/WTpooled0.918511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.239090.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.038870.921
DC3000/delta hrp 6h1.067511
DC3000/delta hrp 12h1.060791
DC3000/delta hrp 24h1.051590.604

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.366320.048
DC3000 delta B/DC3000 delta AB1.581320.079

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.372671
Exp 36h1.215010.693
Exp 60h1.283190.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.983321
Var 0h0.965441
Var 12h I row2-row11.031390.736
Var 12h NI row2-row11.251740.281
Var 36h I row2-row11.057141
Var 36h NI row2-row10.850350.584
Var 60h I row2-row10.992620.952
Var 60h NI row2-row10.777470.313
Time course 0hI-0hNI1.200910.344
Time course 12hI-12hNI1.253710.064
Time course 36hI-36hNI2.169350.004
Time course 60hI-60hNI2.834660.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.944580.428
transgenic ySAMdc/azygous control (breaker)0.637760.142
transgenic ySAMdc/azygous control (red)0.878581

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.330670.036

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.707570.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.990011
Manapal/WT (break)1.180340.183
Manapal/WT (red)0.763170.181