Expression of 1-1-7.1.9.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02573 | 0.867 |
27DAP/17DAP | 1.03841 | 1 |
39DAP/27DAP | 1.98611 | 0.305 |
41DAP/39DAP | 1.26276 | 0.535 |
42DAP/41DAP | 0.76665 | 0.774 |
43DAP/42DAP | 1.0446 | 0.937 |
47DAP/43DAP | 0.83109 | 0.433 |
52DAP/47DAP | 1.1036 | 0.895 |
57DAP/52DAP | 1.05328 | 0.995 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08308 | 0.735 |
17DAP/reference | 1.12323 | 0.143 |
27DAP/reference | 1.26009 | 0.033 |
39DAP/reference | 1.34527 | 0.041 |
41DAP/reference | 1.07205 | 0.587 |
42DAP/reference | 1.3335 | 0.002 |
43DAP/reference | 1.45251 | 0.01 |
47DAP/reference | 1.46078 | 0.003 |
52DAP/reference | 1.33154 | 0.017 |
57DAP/reference | 1.56548 | 0.01 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03062 | 1 |
27DAP/17DAP | 1.02503 | 0.973 |
39DAP/27DAP | 1.43737 | 0.078 |
41DAP/39DAP | 1.42258 | 0.719 |
42DAP/41DAP | 1.06581 | 1 |
43DAP/42DAP | 0.70688 | 0.049 |
47DAP/43DAP | 1.19465 | 0.318 |
52DAP/47DAP | 0.82629 | 0.3 |
57DAP/52DAP | 0.94898 | 0.541 |
57DAP/7DAP | 1.26866 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12003 | 0.157 |
17DAP/reference | 1.11628 | 0.162 |
27DAP/reference | 1.02786 | 0.804 |
39DAP/reference | 1.27 | 0.017 |
41DAP/reference | 1.14852 | 0.232 |
42DAP/reference | 0.96631 | 0.458 |
43DAP/reference | 1.47708 | 0.012 |
47DAP/reference | 1.57606 | 0.024 |
52DAP/reference | 1.32603 | 0.025 |
57DAP/reference | 1.42807 | 0.008 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9858 | 0.756 |
17DAP/reference | 0.83903 | 0.01 |
27DAP/reference | 1.16593 | 0.303 |
39DAP/reference | 1.1942 | 0.15 |
41DAP/reference | 1.35557 | 0.011 |
42DAP/reference | 1.289 | 0.029 |
43DAP/reference | 1.08803 | 0.899 |
47DAP/reference | 1.47101 | 0.008 |
52DAP/reference | 0.95197 | 0.259 |
57DAP/reference | 1.0821 | 0.593 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16533 | 0.18 |
17DAP/reference | 0.9255 | 0.417 |
27DAP/reference | 1.10057 | 0.179 |
39DAP/reference | 1.23389 | 0.037 |
41DAP/reference | 0.92527 | 0.04 |
42DAP/reference | 1.06335 | 0.55 |
43DAP/reference | 1.22226 | 0.134 |
47DAP/reference | 0.91812 | 0.24 |
52DAP/reference | 1.18619 | 0.363 |
57DAP/reference | 1.13363 | 0.121 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05395 | 0.966 |
26DAP/20DAP | 1.19842 | 0.7 |
34DAP/26DAP | 0.98639 | 0.998 |
51DAP/34DAP | 1.03391 | 0.978 |
52DAP/51DAP | 0.81998 | 0.151 |
53DAP/52DAP | 0.95487 | 0.824 |
55DAP/53DAP | 1.01409 | 0.925 |
57DAP/55DAP | 1.20674 | 0.955 |
62DAP/57DAP | 1.08989 | 0.935 |
68DAP/62DAP | 1.21981 | 0.657 |
68DAP/14DAP | 0.84658 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.85148 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 2.00742 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.96361 | 0.66 |
Immature Eggplant/Mature Eggplant | 1.40387 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.28796 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.53677 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.00424 | 1 |
1-1-2/M82 | 1.33577 | 1 |
12-2/M82 | 0.9779 | 1 |
12-4/M82 | 1.10351 | 1 |
1-3/M82 | 1.6812 | 0.277 |
2-1-1/M82 | 1.14453 | 0.439 |
2-1/M82 | 1.3288 | 0.335 |
2-6/M82 | 1.28841 | 0.395 |
3-2/M82 | 1.02723 | 1 |
4-1-1/M82 | 1.05091 | 1 |
4-1/M82 | 1.13647 | 1 |
4-3-2/M82 | 1.51816 | 0.508 |
4-3/M82 | 1.35759 | 0.268 |
5-3/M82 | 1.11286 | 1 |
6-2/M82 | 1.709 | 1 |
6-3/M82 | 0.8748 | 1 |
7-1/M82 | 1.16185 | 0.598 |
7-2/M82 | 1.63325 | 0.324 |
9-3-2/M82 | 1.57961 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.17919 | 0.365 |
IL2-6/WTpooled | 1.042 | 1 |
IL7-5/WTpooled | 0.8335 | |
IL7-3/WTpooled | 2.19097 | 0.362 |
IL12-4/WTpooled | 1.25495 | 0.483 |
IL1-4/WTpooled | 1.27378 | 1 |
WT/WTpooled | 0.91851 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.23909 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03887 | 0.921 |
DC3000/delta hrp 6h | 1.06751 | 1 |
DC3000/delta hrp 12h | 1.06079 | 1 |
DC3000/delta hrp 24h | 1.05159 | 0.604 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.36632 | 0.048 |
DC3000 delta B/DC3000 delta AB | 1.58132 | 0.079 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.37267 | 1 |
Exp 36h | 1.21501 | 0.693 |
Exp 60h | 1.28319 | 0.227 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98332 | 1 |
Var 0h | 0.96544 | 1 |
Var 12h I row2-row1 | 1.03139 | 0.736 |
Var 12h NI row2-row1 | 1.25174 | 0.281 |
Var 36h I row2-row1 | 1.05714 | 1 |
Var 36h NI row2-row1 | 0.85035 | 0.584 |
Var 60h I row2-row1 | 0.99262 | 0.952 |
Var 60h NI row2-row1 | 0.77747 | 0.313 |
Time course 0hI-0hNI | 1.20091 | 0.344 |
Time course 12hI-12hNI | 1.25371 | 0.064 |
Time course 36hI-36hNI | 2.16935 | 0.004 |
Time course 60hI-60hNI | 2.83466 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94458 | 0.428 |
transgenic ySAMdc/azygous control (breaker) | 0.63776 | 0.142 |
transgenic ySAMdc/azygous control (red) | 0.87858 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.33067 | 0.036 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.70757 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.99001 | 1 |
Manapal/WT (break) | 1.18034 | 0.183 |
Manapal/WT (red) | 0.76317 | 0.181 |
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