Expression of 1-1-7.1.9.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.02680.867
27DAP/17DAP1.017960.939
39DAP/27DAP1.395340.32
41DAP/39DAP0.782940.238
42DAP/41DAP1.330280.73
43DAP/42DAP1.227680.974
47DAP/43DAP0.726380.228
52DAP/47DAP1.16470.869
57DAP/52DAP1.194550.952

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.231910.29
17DAP/reference0.985940.737
27DAP/reference1.266610.111
39DAP/reference1.407630.048
41DAP/reference1.104170.393
42DAP/reference1.306340.003
43DAP/reference1.312680.023
47DAP/reference1.65480.001
52DAP/reference1.393580.108
57DAP/reference1.507990.008

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.987750.763
27DAP/17DAP0.947250.782
39DAP/27DAP1.001981
41DAP/39DAP1.39320.603
42DAP/41DAP1.055410.935
43DAP/42DAP1.037660.413
47DAP/43DAP0.969030.833
52DAP/47DAP0.942710.677
57DAP/52DAP0.800940.16
57DAP/7DAP1.008641

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.59720.033
17DAP/reference1.382860.009
27DAP/reference1.203160.009
39DAP/reference1.345650.007
41DAP/reference1.456850.016
42DAP/reference1.490440.046
43DAP/reference1.335560.007
47DAP/reference1.750660.014
52DAP/reference1.389060.026
57DAP/reference1.231860.061

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.070260.704
17DAP/reference0.970020.523
27DAP/reference1.117190.497
39DAP/reference1.069650.686
41DAP/reference1.300340.008
42DAP/reference1.048090.649
43DAP/reference1.06031
47DAP/reference1.554730.008
52DAP/reference0.931520.302
57DAP/reference1.028270.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.395350.036
17DAP/reference1.087780.595
27DAP/reference1.074840.467
39DAP/reference1.256160.022
41DAP/reference1.068320.674
42DAP/reference1.34770.028
43DAP/reference1.391220.035
47DAP/reference1.267580.372
52DAP/reference1.721960.031
57DAP/reference1.766620.026

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.216180.966
26DAP/20DAP1.432020.18
34DAP/26DAP1.047521
51DAP/34DAP0.966940.77
52DAP/51DAP0.74990.151
53DAP/52DAP0.893880.498
55DAP/53DAP0.835280.376
57DAP/55DAP0.63180.088
62DAP/57DAP1.244220.35
68DAP/62DAP0.922410.787
68DAP/14DAP0.856041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.651890.023

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.167720.063
Mature Green Tomato/Ripe Tomato1.241940.399
Immature Eggplant/Mature Eggplant1.034550.462
Ripe Pepper/Ripe Tomato1.451940.258
Mature Eggplant/Ripe Tomato1.08811

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.957870.944
1-1-2/M821.238151
12-2/M820.926690.955
12-4/M821.062851
1-3/M821.928910.26
2-1-1/M821.105430.689
2-1/M820.784980.345
2-6/M821.192040.505
3-2/M821.202840.717
4-1-1/M821.216721
4-1/M821.762881
4-3-2/M821.635690.241
4-3/M821.00881
5-3/M821.076121
6-2/M821.361791
6-3/M820.999531
7-1/M821.06310.598
7-2/M821.25391
9-3-2/M821.286111

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.78590.321
IL2-6/WTpooled0.930621
IL7-5/WTpooled1.13051
IL7-3/WTpooled0.953911
IL12-4/WTpooled1.020721
IL1-4/WTpooled0.758610.444
WT/WTpooled0.93451

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation2.373970.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.995241
DC3000/delta hrp 6h0.949990.95
DC3000/delta hrp 12h0.985781
DC3000/delta hrp 24h0.991991

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.252960.121
DC3000 delta B/DC3000 delta AB1.385640.089

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.399971
Exp 36h1.301641
Exp 60h1.111511

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.114031
Var 0h0.960270.933
Var 12h I row2-row10.88480.338
Var 12h NI row2-row11.053511
Var 36h I row2-row11.12110.309
Var 36h NI row2-row10.929230.706
Var 60h I row2-row10.894110.582
Var 60h NI row2-row10.906290.756
Time course 0hI-0hNI1.13050.486
Time course 12hI-12hNI0.941540.698
Time course 36hI-36hNI1.244820.007
Time course 60hI-60hNI2.0760.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.049690.748
transgenic ySAMdc/azygous control (breaker)1.030891
transgenic ySAMdc/azygous control (red)1.143170.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.861130.227

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.818590.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.007171
Manapal/WT (break)1.000151
Manapal/WT (red)0.928470.36