Expression of 1-1-7.1.9.9
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.00231 | 0.938 |
27DAP/17DAP | 1.18853 | 0.833 |
39DAP/27DAP | 1.40522 | 0.579 |
41DAP/39DAP | 1.21627 | 0.619 |
42DAP/41DAP | 0.981 | 1 |
43DAP/42DAP | 1.53188 | 0.848 |
47DAP/43DAP | 0.94489 | 0.799 |
52DAP/47DAP | 0.85124 | 0.605 |
57DAP/52DAP | 0.99516 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.46108 | 0.008 |
17DAP/reference | 1.28168 | 0.037 |
27DAP/reference | 1.11877 | 0.33 |
39DAP/reference | 1.21628 | 0.035 |
41DAP/reference | 1.28466 | 0.041 |
42DAP/reference | 1.27438 | 0.001 |
43DAP/reference | 1.1704 | 0.118 |
47DAP/reference | 1.23222 | 0.009 |
52DAP/reference | 1.17077 | 0.03 |
57DAP/reference | 0.93398 | 0.324 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.94789 | 0.595 |
27DAP/17DAP | 0.87531 | 0.418 |
39DAP/27DAP | 0.95409 | 0.795 |
41DAP/39DAP | 1.07358 | 1 |
42DAP/41DAP | 1.08683 | 0.8 |
43DAP/42DAP | 0.89311 | 0.336 |
47DAP/43DAP | 1.05835 | 0.914 |
52DAP/47DAP | 0.87508 | 0.56 |
57DAP/52DAP | 0.92788 | 0.587 |
57DAP/7DAP | 0.96336 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.10765 | 0.231 |
17DAP/reference | 0.84611 | 0.108 |
27DAP/reference | 0.9521 | 0.348 |
39DAP/reference | 0.80756 | 0.021 |
41DAP/reference | 0.84564 | 0.064 |
42DAP/reference | 0.80279 | 0.019 |
43DAP/reference | 0.83115 | 0.047 |
47DAP/reference | 0.98049 | 0.671 |
52DAP/reference | 0.83327 | 0.04 |
57DAP/reference | 0.8097 | 0.011 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.21563 | 0.085 |
17DAP/reference | 1.49264 | 0.018 |
27DAP/reference | 1.39662 | 0.16 |
39DAP/reference | 1.12271 | 0.514 |
41DAP/reference | 1.42114 | 0.035 |
42DAP/reference | 1.24624 | 0.013 |
43DAP/reference | 1.32852 | 0.038 |
47DAP/reference | 1.27873 | 0.022 |
52DAP/reference | 1.04806 | 0.988 |
57DAP/reference | 1.37198 | 0.083 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92711 | 0.268 |
17DAP/reference | 1.0367 | 0.932 |
27DAP/reference | 0.89912 | 0.165 |
39DAP/reference | 0.85454 | 0.046 |
41DAP/reference | 1.00757 | 1 |
42DAP/reference | 0.90654 | 0.445 |
43DAP/reference | 0.94145 | 0.432 |
47DAP/reference | 0.92885 | 0.269 |
52DAP/reference | 0.75744 | 0.141 |
57DAP/reference | 0.97244 | 0.516 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.48523 | 0.752 |
26DAP/20DAP | 0.8156 | 0.317 |
34DAP/26DAP | 1.07664 | 1 |
51DAP/34DAP | 0.91569 | 0.508 |
52DAP/51DAP | 1.11661 | 0.377 |
53DAP/52DAP | 1.18127 | 0.678 |
55DAP/53DAP | 1.28072 | 0.555 |
57DAP/55DAP | 1.31379 | 0.818 |
62DAP/57DAP | 1.23151 | 0.868 |
68DAP/62DAP | 0.87957 | 0.668 |
68DAP/14DAP | 0.70206 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05323 | 0.821 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.92121 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.19082 | 0.166 |
Immature Eggplant/Mature Eggplant | 0.99182 | |
Ripe Pepper/Ripe Tomato | 1.11119 | 1 |
Mature Eggplant/Ripe Tomato | 1.46526 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.96272 | 0.907 |
1-1-2/M82 | 0.91303 | 1 |
12-2/M82 | 1.07967 | 1 |
12-4/M82 | 1.13388 | 1 |
1-3/M82 | 0.88573 | 0.501 |
2-1-1/M82 | 1.11013 | 0.689 |
2-1/M82 | 1.18795 | 1 |
2-6/M82 | 1.00034 | 1 |
3-2/M82 | 0.88164 | |
4-1-1/M82 | 0.84559 | 0.962 |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.74232 | |
4-3/M82 | 0.8549 | 1 |
5-3/M82 | 0.9267 | 1 |
6-2/M82 | 1.06965 | 1 |
6-3/M82 | 1.07732 | 1 |
7-1/M82 | 0.89786 | 0.509 |
7-2/M82 | 1.08764 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.75522 | 0.247 |
IL2-6/WTpooled | 1.00445 | 1 |
IL7-5/WTpooled | 0.9114 | 1 |
IL7-3/WTpooled | 0.69256 | 0.298 |
IL12-4/WTpooled | 0.96796 | 1 |
IL1-4/WTpooled | 0.79595 | 0.699 |
WT/WTpooled | 1.09797 | 0.874 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.58288 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91012 | 0.868 |
DC3000/delta hrp 6h | 1.15093 | 1 |
DC3000/delta hrp 12h | 1.22527 | 1 |
DC3000/delta hrp 24h | 1.13558 | 0.095 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 0.82179 | 0.47 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.24116 | 1 |
Exp 36h | 1.17865 | 1 |
Exp 60h | 1.05046 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.96696 | 1 |
Var 0h | 0.9356 | 1 |
Var 12h I row2-row1 | 1.00752 | 1 |
Var 12h NI row2-row1 | 0.89959 | 0.546 |
Var 36h I row2-row1 | 1.13879 | 1 |
Var 36h NI row2-row1 | 2.12325 | 1 |
Var 60h I row2-row1 | 0.9917 | 1 |
Var 60h NI row2-row1 | 1.07465 | 0.904 |
Time course 0hI-0hNI | 0.93398 | 0.373 |
Time course 12hI-12hNI | 0.95107 | 0.782 |
Time course 36hI-36hNI | 0.76017 | 0.023 |
Time course 60hI-60hNI | 0.32897 | 0.005 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.99197 | 0.931 |
transgenic ySAMdc/azygous control (breaker) | 1.13637 | 1 |
transgenic ySAMdc/azygous control (red) | 0.97324 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00747 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.95339 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.54588 | 0.105 |
Manapal/WT (break) | 1.39659 | 0.183 |
Manapal/WT (red) | 0.9769 | 0.863 |
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