Expression of 1-1-7.2.1.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.17730.697
27DAP/17DAP1.300360.742
39DAP/27DAP0.881410.512
41DAP/39DAP1.304960.225
42DAP/41DAP1.02991
43DAP/42DAP0.837790.522
47DAP/43DAP1.044470.926
52DAP/47DAP1.668290.252
57DAP/52DAP0.937220.923

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.986650.645
17DAP/reference1.113330.096
27DAP/reference1.002781
39DAP/reference1.014040.8
41DAP/reference1.063060.48
42DAP/reference0.930720.035
43DAP/reference1.057810.425
47DAP/reference0.980720.392
52DAP/reference1.013010.791
57DAP/reference0.863980.078

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.958690.56
27DAP/17DAP1.002211
39DAP/27DAP1.082350.558
41DAP/39DAP1.04620.896
42DAP/41DAP1.026650.976
43DAP/42DAP0.963630.618
47DAP/43DAP1.010680.969
52DAP/47DAP1.062420.785
57DAP/52DAP1.06360.596
57DAP/7DAP1.151731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.861060.069
17DAP/reference0.832580.012
27DAP/reference0.842860.01
39DAP/reference0.927550.083
41DAP/reference0.895120.027
42DAP/reference0.877670.029
43DAP/reference0.833760.038
47DAP/reference0.854410.293
52DAP/reference0.849610.097
57DAP/reference0.840860.014

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.096340.082
17DAP/reference1.086750.022
27DAP/reference0.919540.15
39DAP/reference0.886130.129
41DAP/reference0.900720.036
42DAP/reference0.891260.055
43DAP/reference1.01210.957
47DAP/reference0.920250.021
52DAP/reference0.984960.469
57DAP/reference1.035490.737

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.899010.092
17DAP/reference0.955040.364
27DAP/reference0.882970.045
39DAP/reference0.856330.019
41DAP/reference0.910950.119
42DAP/reference0.809760.041
43DAP/reference0.875690.044
47DAP/reference1.012681
52DAP/reference0.864440.169
57DAP/reference0.647860.016

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.048280.945
26DAP/20DAP0.918860.512
34DAP/26DAP1.057171
51DAP/34DAP0.950380.688
52DAP/51DAP0.986371
53DAP/52DAP1.008561
55DAP/53DAP0.939510.619
57DAP/55DAP1.045910.975
62DAP/57DAP1.187480.678
68DAP/62DAP1.247270.589
68DAP/14DAP1.089010.826

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.15760.439

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.737660.251
Mature Green Tomato/Ripe Tomato1.095291
Immature Eggplant/Mature Eggplant0.920650.329
Ripe Pepper/Ripe Tomato1.20062
Mature Eggplant/Ripe Tomato1.41718

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.067591
1-1-2/M820.964391
12-2/M820.959150.678
12-4/M820.920791
1-3/M820.92751
2-1-1/M821.083130.764
2-1/M821.215140.335
2-6/M821.037841
3-2/M821.034061
4-1-1/M820.935791
4-1/M820.648371
4-3-2/M821.090831
4-3/M821.07521
5-3/M821.009461
6-2/M820.974661
6-3/M820.971471
7-1/M820.904281
7-2/M821.03191
9-3-2/M821.048091

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.803530.243
IL2-6/WTpooled1.126871
IL7-5/WTpooled1.379040.67
IL7-3/WTpooled0.951621
IL12-4/WTpooled1.039460.891
IL1-4/WTpooled1.120911
WT/WTpooled0.886491

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.08320.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.952081
DC3000/delta hrp 6h0.896860.95
DC3000/delta hrp 12h0.993361
DC3000/delta hrp 24h1.000321

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.175440.515
DC3000 delta B/DC3000 delta AB0.786340.236

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.957371
Exp 36h0.935920.879
Exp 60h1.128841

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.35383
Var 12h I row2-row11.209810.204
Var 12h NI row2-row11.26811
Var 36h I row2-row10.798411
Var 36h NI row2-row10.85240.706
Var 60h I row2-row11.38619
Var 60h NI row2-row11.042531
Time course 0hI-0hNI1.018641
Time course 12hI-12hNI0.893330.402
Time course 36hI-36hNI0.92760.269
Time course 60hI-60hNI1.371620.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.957390.362
transgenic ySAMdc/azygous control (breaker)1.15340.248
transgenic ySAMdc/azygous control (red)1.132250.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.023580.223

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.989151

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.955981
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.725810.184