Expression of 1-1-7.2.1.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.1773 | 0.697 |
27DAP/17DAP | 1.30036 | 0.742 |
39DAP/27DAP | 0.88141 | 0.512 |
41DAP/39DAP | 1.30496 | 0.225 |
42DAP/41DAP | 1.0299 | 1 |
43DAP/42DAP | 0.83779 | 0.522 |
47DAP/43DAP | 1.04447 | 0.926 |
52DAP/47DAP | 1.66829 | 0.252 |
57DAP/52DAP | 0.93722 | 0.923 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98665 | 0.645 |
17DAP/reference | 1.11333 | 0.096 |
27DAP/reference | 1.00278 | 1 |
39DAP/reference | 1.01404 | 0.8 |
41DAP/reference | 1.06306 | 0.48 |
42DAP/reference | 0.93072 | 0.035 |
43DAP/reference | 1.05781 | 0.425 |
47DAP/reference | 0.98072 | 0.392 |
52DAP/reference | 1.01301 | 0.791 |
57DAP/reference | 0.86398 | 0.078 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95869 | 0.56 |
27DAP/17DAP | 1.00221 | 1 |
39DAP/27DAP | 1.08235 | 0.558 |
41DAP/39DAP | 1.0462 | 0.896 |
42DAP/41DAP | 1.02665 | 0.976 |
43DAP/42DAP | 0.96363 | 0.618 |
47DAP/43DAP | 1.01068 | 0.969 |
52DAP/47DAP | 1.06242 | 0.785 |
57DAP/52DAP | 1.0636 | 0.596 |
57DAP/7DAP | 1.15173 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86106 | 0.069 |
17DAP/reference | 0.83258 | 0.012 |
27DAP/reference | 0.84286 | 0.01 |
39DAP/reference | 0.92755 | 0.083 |
41DAP/reference | 0.89512 | 0.027 |
42DAP/reference | 0.87767 | 0.029 |
43DAP/reference | 0.83376 | 0.038 |
47DAP/reference | 0.85441 | 0.293 |
52DAP/reference | 0.84961 | 0.097 |
57DAP/reference | 0.84086 | 0.014 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.09634 | 0.082 |
17DAP/reference | 1.08675 | 0.022 |
27DAP/reference | 0.91954 | 0.15 |
39DAP/reference | 0.88613 | 0.129 |
41DAP/reference | 0.90072 | 0.036 |
42DAP/reference | 0.89126 | 0.055 |
43DAP/reference | 1.0121 | 0.957 |
47DAP/reference | 0.92025 | 0.021 |
52DAP/reference | 0.98496 | 0.469 |
57DAP/reference | 1.03549 | 0.737 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89901 | 0.092 |
17DAP/reference | 0.95504 | 0.364 |
27DAP/reference | 0.88297 | 0.045 |
39DAP/reference | 0.85633 | 0.019 |
41DAP/reference | 0.91095 | 0.119 |
42DAP/reference | 0.80976 | 0.041 |
43DAP/reference | 0.87569 | 0.044 |
47DAP/reference | 1.01268 | 1 |
52DAP/reference | 0.86444 | 0.169 |
57DAP/reference | 0.64786 | 0.016 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04828 | 0.945 |
26DAP/20DAP | 0.91886 | 0.512 |
34DAP/26DAP | 1.05717 | 1 |
51DAP/34DAP | 0.95038 | 0.688 |
52DAP/51DAP | 0.98637 | 1 |
53DAP/52DAP | 1.00856 | 1 |
55DAP/53DAP | 0.93951 | 0.619 |
57DAP/55DAP | 1.04591 | 0.975 |
62DAP/57DAP | 1.18748 | 0.678 |
68DAP/62DAP | 1.24727 | 0.589 |
68DAP/14DAP | 1.08901 | 0.826 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.1576 | 0.439 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73766 | 0.251 |
Mature Green Tomato/Ripe Tomato | 1.09529 | 1 |
Immature Eggplant/Mature Eggplant | 0.92065 | 0.329 |
Ripe Pepper/Ripe Tomato | 1.20062 | |
Mature Eggplant/Ripe Tomato | 1.41718 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.06759 | 1 |
1-1-2/M82 | 0.96439 | 1 |
12-2/M82 | 0.95915 | 0.678 |
12-4/M82 | 0.92079 | 1 |
1-3/M82 | 0.9275 | 1 |
2-1-1/M82 | 1.08313 | 0.764 |
2-1/M82 | 1.21514 | 0.335 |
2-6/M82 | 1.03784 | 1 |
3-2/M82 | 1.03406 | 1 |
4-1-1/M82 | 0.93579 | 1 |
4-1/M82 | 0.64837 | 1 |
4-3-2/M82 | 1.09083 | 1 |
4-3/M82 | 1.0752 | 1 |
5-3/M82 | 1.00946 | 1 |
6-2/M82 | 0.97466 | 1 |
6-3/M82 | 0.97147 | 1 |
7-1/M82 | 0.90428 | 1 |
7-2/M82 | 1.0319 | 1 |
9-3-2/M82 | 1.04809 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.80353 | 0.243 |
IL2-6/WTpooled | 1.12687 | 1 |
IL7-5/WTpooled | 1.37904 | 0.67 |
IL7-3/WTpooled | 0.95162 | 1 |
IL12-4/WTpooled | 1.03946 | 0.891 |
IL1-4/WTpooled | 1.12091 | 1 |
WT/WTpooled | 0.88649 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.0832 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.95208 | 1 |
DC3000/delta hrp 6h | 0.89686 | 0.95 |
DC3000/delta hrp 12h | 0.99336 | 1 |
DC3000/delta hrp 24h | 1.00032 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17544 | 0.515 |
DC3000 delta B/DC3000 delta AB | 0.78634 | 0.236 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.95737 | 1 |
Exp 36h | 0.93592 | 0.879 |
Exp 60h | 1.12884 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.35383 | |
Var 12h I row2-row1 | 1.20981 | 0.204 |
Var 12h NI row2-row1 | 1.2681 | 1 |
Var 36h I row2-row1 | 0.79841 | 1 |
Var 36h NI row2-row1 | 0.8524 | 0.706 |
Var 60h I row2-row1 | 1.38619 | |
Var 60h NI row2-row1 | 1.04253 | 1 |
Time course 0hI-0hNI | 1.01864 | 1 |
Time course 12hI-12hNI | 0.89333 | 0.402 |
Time course 36hI-36hNI | 0.9276 | 0.269 |
Time course 60hI-60hNI | 1.37162 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95739 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.1534 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.13225 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.02358 | 0.223 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.98915 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.95598 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.72581 | 0.184 |
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