Expression of 1-1-7.2.1.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.100640.681
27DAP/17DAP1.145980.849
39DAP/27DAP0.957260.663
41DAP/39DAP0.873180.506
42DAP/41DAP0.942481
43DAP/42DAP0.945410.705
47DAP/43DAP0.907720.687
52DAP/47DAP1.146690.886
57DAP/52DAP1.02220.993

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.020480.76
17DAP/reference1.020320.508
27DAP/reference0.956880.359
39DAP/reference1.036060.557
41DAP/reference1.12140.421
42DAP/reference0.931290.124
43DAP/reference1.015870.957
47DAP/reference0.992910.568
52DAP/reference0.914290.237
57DAP/reference0.832510.038

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.977130.629
27DAP/17DAP0.98870.919
39DAP/27DAP1.058040.623
41DAP/39DAP1.211620.075
42DAP/41DAP0.913390.382
43DAP/42DAP1.008540.83
47DAP/43DAP0.977430.877
52DAP/47DAP1.055340.789
57DAP/52DAP0.94990.598
57DAP/7DAP1.062131

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.085670.638
17DAP/reference1.19417
27DAP/reference1.289240.008
39DAP/reference1.076660.411
41DAP/reference1.120420.27
42DAP/reference1.37089
43DAP/reference1.384930.016
47DAP/reference1.045880.549
52DAP/reference1.32143
57DAP/reference1.450580.198

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.137110.039
17DAP/reference1.113980.063
27DAP/reference1.096850.338
39DAP/reference1.010170.769
41DAP/reference0.975140.459
42DAP/reference0.925740.289
43DAP/reference1.218220.028
47DAP/reference0.960240.41
52DAP/reference0.976190.576
57DAP/reference1.244530.011

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.081590.408
17DAP/reference1.034750.833
27DAP/reference1.028210.934
39DAP/reference1.394470.353
41DAP/reference1.026220.961
42DAP/reference1.30050.5
43DAP/reference1.102220.815
47DAP/reference0.890870.103
52DAP/reference1.133050.649
57DAP/reference1.073720.592

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.481970.966
26DAP/20DAP0.942890.512
34DAP/26DAP1.033041
51DAP/34DAP0.996510.824
52DAP/51DAP0.978121
53DAP/52DAP1.008091
55DAP/53DAP0.961210.592
57DAP/55DAP1.212570.61
62DAP/57DAP1.072851
68DAP/62DAP1.061861
68DAP/14DAP0.846041

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.928960.341

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.094470.417
Mature Green Tomato/Ripe Tomato1.115120.267
Immature Eggplant/Mature Eggplant1.421340.058
Ripe Pepper/Ripe Tomato2.896561
Mature Eggplant/Ripe Tomato3.391010.268

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.017471
12-2/M820.90768
12-4/M820.941451
1-3/M820.81202
2-1-1/M821.24431
2-1/M82N/AN/A
2-6/M821.19419
3-2/M821.02562
4-1-1/M820.8003
4-1/M820.719390.867
4-3-2/M821.160321
4-3/M820.97251
5-3/M820.953741
6-2/M82N/AN/A
6-3/M821.02761
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.97531

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.393360.277
IL2-6/WTpooled0.673130.473
IL7-5/WTpooled1.57259
IL7-3/WTpooled1.48511
IL12-4/WTpooled1.442880.532
IL1-4/WTpooled1.369651
WT/WTpooled1.025471

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.889880.75

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.062780.921
DC3000/delta hrp 6h1.078141
DC3000/delta hrp 12h1.008151
DC3000/delta hrp 24h0.959580.642

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.547190.476
DC3000 delta B/DC3000 delta AB0.964850.805

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.102081
Exp 36h1.125741
Exp 60h1.1151

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row11.384870.296
Var 12h NI row2-row11.29842
Var 36h I row2-row10.840090.575
Var 36h NI row2-row11.04297
Var 60h I row2-row10.63725
Var 60h NI row2-row10.82203
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNI0.980930.931
Time course 36hI-36hNI1.286920.355
Time course 60hI-60hNI3.82250.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.949430.301
transgenic ySAMdc/azygous control (breaker)1.377320.172
transgenic ySAMdc/azygous control (red)1.083330.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.030140.177

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.23750.239

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.650660.14
Manapal/WT (break)1.900110.13
Manapal/WT (red)2.264710.164