Expression of 1-1-7.2.1.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10064 | 0.681 |
27DAP/17DAP | 1.14598 | 0.849 |
39DAP/27DAP | 0.95726 | 0.663 |
41DAP/39DAP | 0.87318 | 0.506 |
42DAP/41DAP | 0.94248 | 1 |
43DAP/42DAP | 0.94541 | 0.705 |
47DAP/43DAP | 0.90772 | 0.687 |
52DAP/47DAP | 1.14669 | 0.886 |
57DAP/52DAP | 1.0222 | 0.993 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02048 | 0.76 |
17DAP/reference | 1.02032 | 0.508 |
27DAP/reference | 0.95688 | 0.359 |
39DAP/reference | 1.03606 | 0.557 |
41DAP/reference | 1.1214 | 0.421 |
42DAP/reference | 0.93129 | 0.124 |
43DAP/reference | 1.01587 | 0.957 |
47DAP/reference | 0.99291 | 0.568 |
52DAP/reference | 0.91429 | 0.237 |
57DAP/reference | 0.83251 | 0.038 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.97713 | 0.629 |
27DAP/17DAP | 0.9887 | 0.919 |
39DAP/27DAP | 1.05804 | 0.623 |
41DAP/39DAP | 1.21162 | 0.075 |
42DAP/41DAP | 0.91339 | 0.382 |
43DAP/42DAP | 1.00854 | 0.83 |
47DAP/43DAP | 0.97743 | 0.877 |
52DAP/47DAP | 1.05534 | 0.789 |
57DAP/52DAP | 0.9499 | 0.598 |
57DAP/7DAP | 1.06213 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08567 | 0.638 |
17DAP/reference | 1.19417 | |
27DAP/reference | 1.28924 | 0.008 |
39DAP/reference | 1.07666 | 0.411 |
41DAP/reference | 1.12042 | 0.27 |
42DAP/reference | 1.37089 | |
43DAP/reference | 1.38493 | 0.016 |
47DAP/reference | 1.04588 | 0.549 |
52DAP/reference | 1.32143 | |
57DAP/reference | 1.45058 | 0.198 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13711 | 0.039 |
17DAP/reference | 1.11398 | 0.063 |
27DAP/reference | 1.09685 | 0.338 |
39DAP/reference | 1.01017 | 0.769 |
41DAP/reference | 0.97514 | 0.459 |
42DAP/reference | 0.92574 | 0.289 |
43DAP/reference | 1.21822 | 0.028 |
47DAP/reference | 0.96024 | 0.41 |
52DAP/reference | 0.97619 | 0.576 |
57DAP/reference | 1.24453 | 0.011 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08159 | 0.408 |
17DAP/reference | 1.03475 | 0.833 |
27DAP/reference | 1.02821 | 0.934 |
39DAP/reference | 1.39447 | 0.353 |
41DAP/reference | 1.02622 | 0.961 |
42DAP/reference | 1.3005 | 0.5 |
43DAP/reference | 1.10222 | 0.815 |
47DAP/reference | 0.89087 | 0.103 |
52DAP/reference | 1.13305 | 0.649 |
57DAP/reference | 1.07372 | 0.592 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.48197 | 0.966 |
26DAP/20DAP | 0.94289 | 0.512 |
34DAP/26DAP | 1.03304 | 1 |
51DAP/34DAP | 0.99651 | 0.824 |
52DAP/51DAP | 0.97812 | 1 |
53DAP/52DAP | 1.00809 | 1 |
55DAP/53DAP | 0.96121 | 0.592 |
57DAP/55DAP | 1.21257 | 0.61 |
62DAP/57DAP | 1.07285 | 1 |
68DAP/62DAP | 1.06186 | 1 |
68DAP/14DAP | 0.84604 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.92896 | 0.341 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.09447 | 0.417 |
Mature Green Tomato/Ripe Tomato | 1.11512 | 0.267 |
Immature Eggplant/Mature Eggplant | 1.42134 | 0.058 |
Ripe Pepper/Ripe Tomato | 2.89656 | 1 |
Mature Eggplant/Ripe Tomato | 3.39101 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.01747 | 1 |
12-2/M82 | 0.90768 | |
12-4/M82 | 0.94145 | 1 |
1-3/M82 | 0.81202 | |
2-1-1/M82 | 1.2443 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.19419 | |
3-2/M82 | 1.02562 | |
4-1-1/M82 | 0.8003 | |
4-1/M82 | 0.71939 | 0.867 |
4-3-2/M82 | 1.16032 | 1 |
4-3/M82 | 0.9725 | 1 |
5-3/M82 | 0.95374 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 1.02761 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.9753 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.39336 | 0.277 |
IL2-6/WTpooled | 0.67313 | 0.473 |
IL7-5/WTpooled | 1.57259 | |
IL7-3/WTpooled | 1.4851 | 1 |
IL12-4/WTpooled | 1.44288 | 0.532 |
IL1-4/WTpooled | 1.36965 | 1 |
WT/WTpooled | 1.02547 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.88988 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.06278 | 0.921 |
DC3000/delta hrp 6h | 1.07814 | 1 |
DC3000/delta hrp 12h | 1.00815 | 1 |
DC3000/delta hrp 24h | 0.95958 | 0.642 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.54719 | 0.476 |
DC3000 delta B/DC3000 delta AB | 0.96485 | 0.805 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.10208 | 1 |
Exp 36h | 1.12574 | 1 |
Exp 60h | 1.115 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.38487 | 0.296 |
Var 12h NI row2-row1 | 1.29842 | |
Var 36h I row2-row1 | 0.84009 | 0.575 |
Var 36h NI row2-row1 | 1.04297 | |
Var 60h I row2-row1 | 0.63725 | |
Var 60h NI row2-row1 | 0.82203 | |
Time course 0hI-0hNI | N/A | N/A |
Time course 12hI-12hNI | 0.98093 | 0.931 |
Time course 36hI-36hNI | 1.28692 | 0.355 |
Time course 60hI-60hNI | 3.8225 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.94943 | 0.301 |
transgenic ySAMdc/azygous control (breaker) | 1.37732 | 0.172 |
transgenic ySAMdc/azygous control (red) | 1.08333 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03014 | 0.177 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.2375 | 0.239 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.65066 | 0.14 |
Manapal/WT (break) | 1.90011 | 0.13 |
Manapal/WT (red) | 2.26471 | 0.164 |
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