Expression of 1-1-7.2.1.19

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.788710.077
27DAP/17DAP1.03891
39DAP/27DAP1.190660.692
41DAP/39DAP0.948910.777
42DAP/41DAP1.100460.903
43DAP/42DAP0.898450.705
47DAP/43DAP0.874680.591
52DAP/47DAP1.308720.515
57DAP/52DAP0.97890.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.04310.788
17DAP/reference0.957810.224
27DAP/reference0.944710.141
39DAP/reference1.016670.57
41DAP/reference0.912560.201
42DAP/reference0.972630.233
43DAP/reference0.980710.708
47DAP/reference0.964820.242
52DAP/reference0.969360.449
57DAP/reference0.834390.034

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.985030.763
27DAP/17DAP1.027690.928
39DAP/27DAP0.957060.616
41DAP/39DAP1.049380.735
42DAP/41DAP0.991890.87
43DAP/42DAP0.983950.854
47DAP/43DAP1.025050.817
52DAP/47DAP0.998920.982
57DAP/52DAP0.974790.632
57DAP/7DAP1.07121

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.022270.857
17DAP/reference0.978120.338
27DAP/reference0.923240.012
39DAP/reference1.014150.779
41DAP/reference0.933240.166
42DAP/reference1.025810.308
43DAP/reference1.010080.707
47DAP/reference0.97470.504
52DAP/reference1.0410.286
57DAP/reference0.935250.314

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.068720.23
17DAP/reference1.112990.016
27DAP/reference1.21970.072
39DAP/reference1.067831
41DAP/reference1.054280.925
42DAP/reference0.996540.594
43DAP/reference1.052660.662
47DAP/reference0.983390.543
52DAP/reference1.019760.702
57DAP/reference0.939770.259

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.01210.984
17DAP/reference0.957610.275
27DAP/reference0.918170.032
39DAP/reference0.956650.246
41DAP/reference0.975760.417
42DAP/reference1.057260.327
43DAP/reference1.065980.555
47DAP/reference0.881620.028
52DAP/reference0.950870.395
57DAP/reference1.001470.873

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.98721
26DAP/20DAP1.08037
34DAP/26DAP1.130331
51DAP/34DAP0.960520.714
52DAP/51DAP0.997741
53DAP/52DAP1.019871
55DAP/53DAP0.957980.746
57DAP/55DAP1.081540.865
62DAP/57DAP1.04330.935
68DAP/62DAP1.09270.827
68DAP/14DAP1.119630.636

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.146350.14

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.899710.436
Mature Green Tomato/Ripe Tomato0.868550.411
Immature Eggplant/Mature Eggplant1.396010.052
Ripe Pepper/Ripe Tomato1.285781
Mature Eggplant/Ripe Tomato1.111241

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.027121
1-1-2/M820.948371
12-2/M820.925240.955
12-4/M820.965570.619
1-3/M821.076081
2-1-1/M820.931920.784
2-1/M821.105351
2-6/M820.884551
3-2/M821.011671
4-1-1/M821.112391
4-1/M820.939061
4-3-2/M821.065891
4-3/M820.927411
5-3/M821.002131
6-2/M821.211081
6-3/M820.983011
7-1/M820.982431
7-2/M821.024821
9-3-2/M821.04476

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.83061
IL2-6/WTpooled0.525790.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.070631
IL12-4/WTpooled0.902090.71
IL1-4/WTpooled0.985971
WT/WTpooled1.063651

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.891440.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.969421
DC3000/delta hrp 6h0.899720.95
DC3000/delta hrp 12h1.012811
DC3000/delta hrp 24h1.033080.69

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.159020.076
DC3000 delta B/DC3000 delta AB1.142660.23

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.070651
Exp 36h1.256051
Exp 60h1.105731

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.291150.594
Var 12h I row2-row11.345260.187
Var 12h NI row2-row11.230360.235
Var 36h I row2-row11.176050.283
Var 36h NI row2-row10.907480.478
Var 60h I row2-row10.79118
Var 60h NI row2-row10.84590.431
Time course 0hI-0hNI0.955440.858
Time course 12hI-12hNI1.031920.747
Time course 36hI-36hNI1.281440.05
Time course 60hI-60hNI1.211570.022

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.041450.482
transgenic ySAMdc/azygous control (breaker)1.649480.248
transgenic ySAMdc/azygous control (red)1.250940.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.047840.092

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.712910.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.913441
Manapal/WT (break)1.014381
Manapal/WT (red)1.140160.413