Expression of 1-1-7.2.1.19
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.78871 | 0.077 |
27DAP/17DAP | 1.0389 | 1 |
39DAP/27DAP | 1.19066 | 0.692 |
41DAP/39DAP | 0.94891 | 0.777 |
42DAP/41DAP | 1.10046 | 0.903 |
43DAP/42DAP | 0.89845 | 0.705 |
47DAP/43DAP | 0.87468 | 0.591 |
52DAP/47DAP | 1.30872 | 0.515 |
57DAP/52DAP | 0.9789 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0431 | 0.788 |
17DAP/reference | 0.95781 | 0.224 |
27DAP/reference | 0.94471 | 0.141 |
39DAP/reference | 1.01667 | 0.57 |
41DAP/reference | 0.91256 | 0.201 |
42DAP/reference | 0.97263 | 0.233 |
43DAP/reference | 0.98071 | 0.708 |
47DAP/reference | 0.96482 | 0.242 |
52DAP/reference | 0.96936 | 0.449 |
57DAP/reference | 0.83439 | 0.034 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.98503 | 0.763 |
27DAP/17DAP | 1.02769 | 0.928 |
39DAP/27DAP | 0.95706 | 0.616 |
41DAP/39DAP | 1.04938 | 0.735 |
42DAP/41DAP | 0.99189 | 0.87 |
43DAP/42DAP | 0.98395 | 0.854 |
47DAP/43DAP | 1.02505 | 0.817 |
52DAP/47DAP | 0.99892 | 0.982 |
57DAP/52DAP | 0.97479 | 0.632 |
57DAP/7DAP | 1.0712 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02227 | 0.857 |
17DAP/reference | 0.97812 | 0.338 |
27DAP/reference | 0.92324 | 0.012 |
39DAP/reference | 1.01415 | 0.779 |
41DAP/reference | 0.93324 | 0.166 |
42DAP/reference | 1.02581 | 0.308 |
43DAP/reference | 1.01008 | 0.707 |
47DAP/reference | 0.9747 | 0.504 |
52DAP/reference | 1.041 | 0.286 |
57DAP/reference | 0.93525 | 0.314 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06872 | 0.23 |
17DAP/reference | 1.11299 | 0.016 |
27DAP/reference | 1.2197 | 0.072 |
39DAP/reference | 1.06783 | 1 |
41DAP/reference | 1.05428 | 0.925 |
42DAP/reference | 0.99654 | 0.594 |
43DAP/reference | 1.05266 | 0.662 |
47DAP/reference | 0.98339 | 0.543 |
52DAP/reference | 1.01976 | 0.702 |
57DAP/reference | 0.93977 | 0.259 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.0121 | 0.984 |
17DAP/reference | 0.95761 | 0.275 |
27DAP/reference | 0.91817 | 0.032 |
39DAP/reference | 0.95665 | 0.246 |
41DAP/reference | 0.97576 | 0.417 |
42DAP/reference | 1.05726 | 0.327 |
43DAP/reference | 1.06598 | 0.555 |
47DAP/reference | 0.88162 | 0.028 |
52DAP/reference | 0.95087 | 0.395 |
57DAP/reference | 1.00147 | 0.873 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.9872 | 1 |
26DAP/20DAP | 1.08037 | |
34DAP/26DAP | 1.13033 | 1 |
51DAP/34DAP | 0.96052 | 0.714 |
52DAP/51DAP | 0.99774 | 1 |
53DAP/52DAP | 1.01987 | 1 |
55DAP/53DAP | 0.95798 | 0.746 |
57DAP/55DAP | 1.08154 | 0.865 |
62DAP/57DAP | 1.0433 | 0.935 |
68DAP/62DAP | 1.0927 | 0.827 |
68DAP/14DAP | 1.11963 | 0.636 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14635 | 0.14 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.89971 | 0.436 |
Mature Green Tomato/Ripe Tomato | 0.86855 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.39601 | 0.052 |
Ripe Pepper/Ripe Tomato | 1.28578 | 1 |
Mature Eggplant/Ripe Tomato | 1.11124 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.02712 | 1 |
1-1-2/M82 | 0.94837 | 1 |
12-2/M82 | 0.92524 | 0.955 |
12-4/M82 | 0.96557 | 0.619 |
1-3/M82 | 1.07608 | 1 |
2-1-1/M82 | 0.93192 | 0.784 |
2-1/M82 | 1.10535 | 1 |
2-6/M82 | 0.88455 | 1 |
3-2/M82 | 1.01167 | 1 |
4-1-1/M82 | 1.11239 | 1 |
4-1/M82 | 0.93906 | 1 |
4-3-2/M82 | 1.06589 | 1 |
4-3/M82 | 0.92741 | 1 |
5-3/M82 | 1.00213 | 1 |
6-2/M82 | 1.21108 | 1 |
6-3/M82 | 0.98301 | 1 |
7-1/M82 | 0.98243 | 1 |
7-2/M82 | 1.02482 | 1 |
9-3-2/M82 | 1.04476 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.8306 | 1 |
IL2-6/WTpooled | 0.52579 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.07063 | 1 |
IL12-4/WTpooled | 0.90209 | 0.71 |
IL1-4/WTpooled | 0.98597 | 1 |
WT/WTpooled | 1.06365 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.89144 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96942 | 1 |
DC3000/delta hrp 6h | 0.89972 | 0.95 |
DC3000/delta hrp 12h | 1.01281 | 1 |
DC3000/delta hrp 24h | 1.03308 | 0.69 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15902 | 0.076 |
DC3000 delta B/DC3000 delta AB | 1.14266 | 0.23 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07065 | 1 |
Exp 36h | 1.25605 | 1 |
Exp 60h | 1.10573 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 1.29115 | 0.594 |
Var 12h I row2-row1 | 1.34526 | 0.187 |
Var 12h NI row2-row1 | 1.23036 | 0.235 |
Var 36h I row2-row1 | 1.17605 | 0.283 |
Var 36h NI row2-row1 | 0.90748 | 0.478 |
Var 60h I row2-row1 | 0.79118 | |
Var 60h NI row2-row1 | 0.8459 | 0.431 |
Time course 0hI-0hNI | 0.95544 | 0.858 |
Time course 12hI-12hNI | 1.03192 | 0.747 |
Time course 36hI-36hNI | 1.28144 | 0.05 |
Time course 60hI-60hNI | 1.21157 | 0.022 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.04145 | 0.482 |
transgenic ySAMdc/azygous control (breaker) | 1.64948 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.25094 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.04784 | 0.092 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.71291 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91344 | 1 |
Manapal/WT (break) | 1.01438 | 1 |
Manapal/WT (red) | 1.14016 | 0.413 |
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