Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.2.1.2

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.46275	0.291
27DAP/17DAP	1.08609	0.898
39DAP/27DAP	1.29541	0.907
41DAP/39DAP	0.72936	0.156
42DAP/41DAP	1.2362	0.949
43DAP/42DAP	0.88276	0.813
47DAP/43DAP	0.71628	0.236
52DAP/47DAP	1.20985	0.913
57DAP/52DAP	1.04169	0.992

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.75157
17DAP/reference	N/A	N/A
27DAP/reference	0.9273
39DAP/reference	0.47674	0.298
41DAP/reference	1.20054	0.221
42DAP/reference	1.09263	0.756
43DAP/reference	N/A	N/A
47DAP/reference	0.9811	0.568
52DAP/reference	0.83243	0.013
57DAP/reference	0.76229	0.025

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.89145	0.496
27DAP/17DAP	0.96555	0.854
39DAP/27DAP	0.94801	0.768
41DAP/39DAP	1.39943	0.157
42DAP/41DAP	1.30603	0.043
43DAP/42DAP	0.95016	0.709
47DAP/43DAP	1.61229	0.041
52DAP/47DAP	1.16822	0.666
57DAP/52DAP	0.86663	0.558
57DAP/7DAP	0.62654

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.99925	1
17DAP/reference	1.12536	0.03
27DAP/reference	1.18183	0.011
39DAP/reference	0.85796	0.083
41DAP/reference	0.9441	0.341
42DAP/reference	0.93116	0.086
43DAP/reference	1.30333	0.569
47DAP/reference	1.14517	0.549
52DAP/reference	0.91676	0.09
57DAP/reference	0.97933	0.53

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.09901
17DAP/reference	0.40545
27DAP/reference	0.68847
39DAP/reference	N/A	N/A
41DAP/reference	0.55401
42DAP/reference	2.16785
43DAP/reference	0.92681	0.527
47DAP/reference	N/A	N/A
52DAP/reference	1.31474	0.761
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.24433	0.025
17DAP/reference	1.11518	0.371
27DAP/reference	1.47837	0.023
39DAP/reference	1.56221	0.006
41DAP/reference	1.29351	0.009
42DAP/reference	1.37263	0.018
43DAP/reference	1.69157	0.008
47DAP/reference	0.50762
52DAP/reference	1.91378	0.06
57DAP/reference	N/A	N/A

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.73776	0.355
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.9779	0.961
51DAP/34DAP	0.60813	0.059
52DAP/51DAP	0.98565	1
53DAP/52DAP	1.45671	0.738
55DAP/53DAP	0.59476	0.619
57DAP/55DAP	1.72195	0.955
62DAP/57DAP	N/A	N/A
68DAP/62DAP	1.69589
68DAP/14DAP	2.1706	0.541

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	N/A	N/A

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	1.44932	0.277
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	2.1347	0.75
IL7-3/WTpooled	3.95565	1
IL12-4/WTpooled	0.91406	0.71
IL1-4/WTpooled	1.78558	0.421
WT/WTpooled	0.50371	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.34	0.14
Manapal/WT (red)	N/A	N/A