Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.2.1.4

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.51601	0.709
27DAP/17DAP	1.4719	0.833
39DAP/27DAP	1.12736	1
41DAP/39DAP	1.00112	0.771
42DAP/41DAP	0.88499	1
43DAP/42DAP	1.04267	0.931
47DAP/43DAP	1.02426	0.724
52DAP/47DAP	0.81361	0.551
57DAP/52DAP	1.3469	0.849

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	0.79223	0.536
27DAP/reference	0.88696	0.595
39DAP/reference	N/A	N/A
41DAP/reference	1.2905	0.516
42DAP/reference	1.34173	0.053
43DAP/reference	1.05813
47DAP/reference	1.5937	0.541
52DAP/reference	0.98152	0.618
57DAP/reference	0.96333	0.553

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.8332	0.27
27DAP/17DAP	1.05323	0.951
39DAP/27DAP	1.06618	0.677
41DAP/39DAP	0.8602	0.384
42DAP/41DAP	0.94498	0.659
43DAP/42DAP	1.05885	0.554
47DAP/43DAP	1.41294	0.765
52DAP/47DAP	1.3575	0.568
57DAP/52DAP	0.78162	0.461
57DAP/7DAP	0.52587

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.77039	0.27
17DAP/reference	0.82498	0.044
27DAP/reference	0.88337	0.071
39DAP/reference	0.83219	0.039
41DAP/reference	0.8879	0.194
42DAP/reference	0.82283	0.026
43DAP/reference	0.84934	0.115
47DAP/reference	0.83961	0.293
52DAP/reference	0.99835	0.74
57DAP/reference	1.06131	0.966

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.86545	0.374
17DAP/reference	0.57446	0.006
27DAP/reference	0.79173
39DAP/reference	1.43911	0.661
41DAP/reference	N/A	N/A
42DAP/reference	N/A	N/A
43DAP/reference	0.87158	0.468
47DAP/reference	0.716
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.83236	0.049
17DAP/reference	1.08921	0.918
27DAP/reference	0.92543	0.23
39DAP/reference	1.12383	0.987
41DAP/reference	0.86175	0.209
42DAP/reference	0.83928	0.049
43DAP/reference	0.92646	0.305
47DAP/reference	N/A	N/A
52DAP/reference	0.61388	0.067
57DAP/reference	0.73826

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	1.65936
26DAP/20DAP	1.59489
34DAP/26DAP	0.79045	0.893
51DAP/34DAP	0.8215	0.703
52DAP/51DAP	0.64924	1
53DAP/52DAP	1.16619	0.935
55DAP/53DAP	2.4164	0.041
57DAP/55DAP	N/A	N/A
62DAP/57DAP	0.97655
68DAP/62DAP	38.1385
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.13428

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.84351	1
IL12-4/WTpooled	0.71634	0.71
IL1-4/WTpooled	1.15544	1
WT/WTpooled	1.11638	0.785

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	N/A	N/A
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	N/A	N/A