Expression of 1-1-7.2.1.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.973560.683
27DAP/17DAP1.681560.845
39DAP/27DAP1.803580.52
41DAP/39DAP1.254530.376
42DAP/41DAP0.63080.774
43DAP/42DAP1.397930.937
47DAP/43DAP1.42660.809
52DAP/47DAP1.011930.976
57DAP/52DAP1.229760.907

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/referenceN/AN/A
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.81915
41DAP/reference1.121090.759
42DAP/reference1.068480.608
43DAP/reference0.795340.247
47DAP/reference1.809520.002
52DAP/referenceN/AN/A
57DAP/reference0.64394

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.85166
27DAP/17DAP0.67591
39DAP/27DAP1.961930.04
41DAP/39DAPN/AN/A
42DAP/41DAP1.189810.099
43DAP/42DAP0.763460.447
47DAP/43DAP0.39904
52DAP/47DAP1.171540.907
57DAP/52DAP1.015181
57DAP/7DAP0.15747

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.906240.024
17DAP/reference1.974620.006
27DAP/reference2.003490.006
39DAP/reference2.59490.007
41DAP/reference3.032050.009
42DAP/reference2.414850.006
43DAP/reference2.290250.007
47DAP/reference1.899410.043
52DAP/reference1.811570.007
57DAP/reference1.604610.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.080620.907
17DAP/referenceN/AN/A
27DAP/referenceN/AN/A
39DAP/reference0.72983
41DAP/reference0.38199
42DAP/referenceN/AN/A
43DAP/reference0.615170.064
47DAP/reference0.720650.094
52DAP/reference1.482360.498
57DAP/reference0.48184

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.678770.015
17DAP/reference1.326380.269
27DAP/reference1.318510.054
39DAP/reference1.218440.012
41DAP/reference1.223870.537
42DAP/reference1.5240.012
43DAP/reference2.164250.008
47DAP/reference0.52761
52DAP/reference2.172850.037
57DAP/reference3.051560.151

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.091290.966
26DAP/20DAP0.29875
34DAP/26DAP0.930320.909
51DAP/34DAP1.100040.666
52DAP/51DAP0.6028
53DAP/52DAP0.675810.221
55DAP/53DAP1.580040.204
57DAP/55DAP1.86267
62DAP/57DAP1.23903
68DAP/62DAP0.44439
68DAP/14DAP2.93112

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.569990.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.838630.243
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled1.03127
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.78302
IL1-4/WTpooled1.343691
WT/WTpooledN/AN/A

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12hN/AN/A
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.52265

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0hN/AN/A
Var 12h I row2-row1N/AN/A
Var 12h NI row2-row1N/AN/A
Var 36h I row2-row1N/AN/A
Var 36h NI row2-row1N/AN/A
Var 60h I row2-row1N/AN/A
Var 60h NI row2-row1N/AN/A
Time course 0hI-0hNIN/AN/A
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNIN/AN/A
Time course 60hI-60hNIN/AN/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)1.797821
Manapal/WT (red)N/AN/A