Expression of 1-1-7.2.10.14
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.77724 | 0.144 |
27DAP/17DAP | 1.02649 | 1 |
39DAP/27DAP | 0.88864 | 0.474 |
41DAP/39DAP | 1.51262 | 0.293 |
42DAP/41DAP | 0.91232 | 1 |
43DAP/42DAP | 0.81696 | 0.705 |
47DAP/43DAP | 0.95349 | 0.705 |
52DAP/47DAP | 1.90098 | 0.243 |
57DAP/52DAP | 0.70804 | 0.513 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12848 | 0.17 |
17DAP/reference | 0.89286 | 0.057 |
27DAP/reference | 0.87357 | 0.019 |
39DAP/reference | 0.8697 | 0.07 |
41DAP/reference | 0.96718 | 0.542 |
42DAP/reference | 1.11561 | 0.174 |
43DAP/reference | 0.99903 | 0.882 |
47DAP/reference | 0.9863 | 0.503 |
52DAP/reference | 1.0146 | 0.668 |
57DAP/reference | 0.91357 | 0.106 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92345 | 0.496 |
27DAP/17DAP | 1.04555 | 0.98 |
39DAP/27DAP | 0.98849 | 0.932 |
41DAP/39DAP | 1.00259 | 1 |
42DAP/41DAP | 1.12552 | 0.622 |
43DAP/42DAP | 1.01872 | 1 |
47DAP/43DAP | 1.06046 | 0.884 |
52DAP/47DAP | 0.98134 | 0.905 |
57DAP/52DAP | 1.01169 | 0.926 |
57DAP/7DAP | 0.91974 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.86949 | 0.122 |
17DAP/reference | 0.82153 | 0.014 |
27DAP/reference | 0.75164 | 0.01 |
39DAP/reference | 0.76314 | 0.011 |
41DAP/reference | 0.83483 | 0.03 |
42DAP/reference | 0.82605 | 0.017 |
43DAP/reference | 0.71551 | 0.011 |
47DAP/reference | 0.81809 | 0.101 |
52DAP/reference | 0.81137 | 0.015 |
57DAP/reference | 0.73411 | 0.007 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.25406 | 0.049 |
17DAP/reference | 1.40618 | 0.011 |
27DAP/reference | 1.2754 | 0.153 |
39DAP/reference | 1.08557 | 0.806 |
41DAP/reference | 1.03456 | 1 |
42DAP/reference | 1.08895 | 0.5 |
43DAP/reference | 1.46005 | 0.012 |
47DAP/reference | 1.02188 | 0.775 |
52DAP/reference | 1.20988 | 0.043 |
57DAP/reference | 1.38871 | 0.07 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8458 | 0.082 |
17DAP/reference | 0.99699 | 0.763 |
27DAP/reference | 0.67443 | 0.026 |
39DAP/reference | 0.78196 | 0.043 |
41DAP/reference | 0.90589 | 0.264 |
42DAP/reference | 1.05228 | 0.816 |
43DAP/reference | 1.0699 | 0.88 |
47DAP/reference | 1.01992 | 1 |
52DAP/reference | 0.77092 | 0.145 |
57DAP/reference | 1.12674 | 0.8 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02198 | 1 |
26DAP/20DAP | 0.8963 | 0.317 |
34DAP/26DAP | 1.09303 | 1 |
51DAP/34DAP | 1.13899 | 0.496 |
52DAP/51DAP | 1.07603 | 0.556 |
53DAP/52DAP | 1.33232 | 0.097 |
55DAP/53DAP | 1.06012 | 0.741 |
57DAP/55DAP | 1.01941 | 1 |
62DAP/57DAP | 0.99954 | 1 |
68DAP/62DAP | 0.78477 | 0.263 |
68DAP/14DAP | 0.83743 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.91568 | 0.378 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.63471 | 0.157 |
Mature Green Tomato/Ripe Tomato | 1.04143 | 0.898 |
Immature Eggplant/Mature Eggplant | 0.72728 | 0.125 |
Ripe Pepper/Ripe Tomato | 11.1827 | 1 |
Mature Eggplant/Ripe Tomato | 3.61348 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.11946 | 0.877 |
1-1-2/M82 | 0.91774 | 1 |
12-2/M82 | 1.06771 | 0.448 |
12-4/M82 | 0.94164 | 1 |
1-3/M82 | 1.0554 | 1 |
2-1-1/M82 | 0.95818 | |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.95056 | 1 |
3-2/M82 | 0.9899 | 1 |
4-1-1/M82 | 0.98815 | 1 |
4-1/M82 | 0.66139 | 0.737 |
4-3-2/M82 | 0.92898 | 1 |
4-3/M82 | 0.77625 | |
5-3/M82 | 1.06012 | 1 |
6-2/M82 | 0.94075 | |
6-3/M82 | 1.08188 | |
7-1/M82 | 1.17436 | |
7-2/M82 | 1.09283 | 1 |
9-3-2/M82 | 1.05509 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.93719 | 1 |
IL2-6/WTpooled | 1.50132 | |
IL7-5/WTpooled | 0.89471 | 1 |
IL7-3/WTpooled | 1.37389 | 1 |
IL12-4/WTpooled | 1.01855 | 0.891 |
IL1-4/WTpooled | 1.15969 | 1 |
WT/WTpooled | 1.12318 | 0.789 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.80584 | 0.75 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00426 | 1 |
DC3000/delta hrp 6h | 1.22207 | 1 |
DC3000/delta hrp 12h | 0.96445 | 1 |
DC3000/delta hrp 24h | 0.83055 | 0.04 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.60441 | |
DC3000 delta B/DC3000 delta AB | 0.69545 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.78133 | 1 |
Exp 36h | 0.64985 | 0.623 |
Exp 60h | 0.56822 | 0.343 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.01221 | 1 |
Var 0h | 0.50877 | 0.274 |
Var 12h I row2-row1 | 1.06375 | 1 |
Var 12h NI row2-row1 | 0.97812 | 0.82 |
Var 36h I row2-row1 | 0.92935 | 0.805 |
Var 36h NI row2-row1 | 1.04558 | 1 |
Var 60h I row2-row1 | 1.15442 | 0.562 |
Var 60h NI row2-row1 | 0.99679 | 1 |
Time course 0hI-0hNI | 0.97581 | 0.87 |
Time course 12hI-12hNI | 1.01444 | 1 |
Time course 36hI-36hNI | 0.8507 | 0.024 |
Time course 60hI-60hNI | 0.43665 | 0.007 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.19954 | 0.213 |
transgenic ySAMdc/azygous control (breaker) | 1.35707 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.1743 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96114 | 0.058 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.81511 | 0.222 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 3.06732 | 0.088 |
Manapal/WT (break) | 2.26863 | 0.13 |
Manapal/WT (red) | 2.20857 | 0.137 |
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