Expression of 1-1-7.2.10.3

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.182670.512
27DAP/17DAP1.138530.845
39DAP/27DAP0.799440.425
41DAP/39DAP1.275910.295
42DAP/41DAP0.949831
43DAP/42DAP0.973980.909
47DAP/43DAP1.194850.542
52DAP/47DAP0.930190.777
57DAP/52DAP0.967270.784

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.025750.928
17DAP/reference1.10160.143
27DAP/reference0.907130.137
39DAP/reference1.098740.326
41DAP/reference1.256910.067
42DAP/reference1.106420.869
43DAP/reference1.06930.287
47DAP/reference0.956460.322
52DAP/reference0.946240.36
57DAP/reference1.008521

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.809680.131
27DAP/17DAP1.082280.881
39DAP/27DAP1.096240.57
41DAP/39DAP0.973350.893
42DAP/41DAP1.232250.55
43DAP/42DAP0.864840.256
47DAP/43DAP0.913580.781
52DAP/47DAP2.569980.045
57DAP/52DAP2.234290.035
57DAP/7DAP3.199191

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.120610.246
17DAP/reference1.231770.028
27DAP/reference1.039620.804
39DAP/reference1.320990.026
41DAP/reference1.412730.02
42DAP/reference1.362320.1
43DAP/reference2.205270.007
47DAP/reference0.995150.671
52DAP/reference1.816790.026
57DAP/reference1.530410.035

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.631410.069
17DAP/reference1.730530.01
27DAP/reference1.450870.044
39DAP/reference1.179860.316
41DAP/reference1.271060.033
42DAP/reference1.576740.009
43DAP/reference2.574710.055
47DAP/reference1.896870.008
52DAP/reference1.553920.023
57DAP/reference1.665360.02

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.028431
17DAP/reference1.29820.072
27DAP/reference1.540190.022
39DAP/reference1.516930.007
41DAP/reference1.481710.02
42DAP/reference1.123520.373
43DAP/reference1.149890.355
47DAP/reference1.344540.015
52DAP/reference1.395510.205
57DAP/reference0.989410.633

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.002051
26DAP/20DAP2.739050.238
34DAP/26DAP2.151141
51DAP/34DAP2.193550.429
52DAP/51DAP3.01930.033
53DAP/52DAP0.50688
55DAP/53DAP1.352440.193
57DAP/55DAP0.605990.066
62DAP/57DAP1.103530.622
68DAP/62DAP2.467730.455
68DAP/14DAP0.866031

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.235850.019

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.25360.752
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.76015
Mature Eggplant/Ripe Tomato0.926171

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.844
1-1-2/M820.916980.804
12-2/M82N/AN/A
12-4/M820.981491
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M821.10043
4-1-1/M82N/AN/A
4-1/M820.89311
4-3-2/M820.907870.405
4-3/M820.885641
5-3/M821.164321
6-2/M82N/AN/A
6-3/M820.95301
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M820.821671

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.86805
IL2-6/WTpooled1.138850.456
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.778280.294
IL12-4/WTpooled0.73830.71
IL1-4/WTpooled0.973041
WT/WTpooled0.891091

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.928630.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.903091
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.039141
DC3000/delta hrp 24h1.136440.502

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.4320.042
DC3000 delta B/DC3000 delta AB1.291560.204

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36h1.018151
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.98611
Var 0h1.212571
Var 12h I row2-row10.533330.363
Var 12h NI row2-row10.941360.82
Var 36h I row2-row11.048971
Var 36h NI row2-row11.341630.482
Var 60h I row2-row10.654030.285
Var 60h NI row2-row10.833020.932
Time course 0hI-0hNI0.970060.845
Time course 12hI-12hNI1.226310.201
Time course 36hI-36hNI0.925590.33
Time course 60hI-60hNI1.397250.013

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)1.101331
transgenic ySAMdc/azygous control (red)1.297570.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.002970.909

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.929790.789

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.480240.307
Manapal/WT (break)1.032811
Manapal/WT (red)0.995410.863