Expression of 1-1-7.2.10.3
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.18267 | 0.512 |
27DAP/17DAP | 1.13853 | 0.845 |
39DAP/27DAP | 0.79944 | 0.425 |
41DAP/39DAP | 1.27591 | 0.295 |
42DAP/41DAP | 0.94983 | 1 |
43DAP/42DAP | 0.97398 | 0.909 |
47DAP/43DAP | 1.19485 | 0.542 |
52DAP/47DAP | 0.93019 | 0.777 |
57DAP/52DAP | 0.96727 | 0.784 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02575 | 0.928 |
17DAP/reference | 1.1016 | 0.143 |
27DAP/reference | 0.90713 | 0.137 |
39DAP/reference | 1.09874 | 0.326 |
41DAP/reference | 1.25691 | 0.067 |
42DAP/reference | 1.10642 | 0.869 |
43DAP/reference | 1.0693 | 0.287 |
47DAP/reference | 0.95646 | 0.322 |
52DAP/reference | 0.94624 | 0.36 |
57DAP/reference | 1.00852 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.80968 | 0.131 |
27DAP/17DAP | 1.08228 | 0.881 |
39DAP/27DAP | 1.09624 | 0.57 |
41DAP/39DAP | 0.97335 | 0.893 |
42DAP/41DAP | 1.23225 | 0.55 |
43DAP/42DAP | 0.86484 | 0.256 |
47DAP/43DAP | 0.91358 | 0.781 |
52DAP/47DAP | 2.56998 | 0.045 |
57DAP/52DAP | 2.23429 | 0.035 |
57DAP/7DAP | 3.19919 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12061 | 0.246 |
17DAP/reference | 1.23177 | 0.028 |
27DAP/reference | 1.03962 | 0.804 |
39DAP/reference | 1.32099 | 0.026 |
41DAP/reference | 1.41273 | 0.02 |
42DAP/reference | 1.36232 | 0.1 |
43DAP/reference | 2.20527 | 0.007 |
47DAP/reference | 0.99515 | 0.671 |
52DAP/reference | 1.81679 | 0.026 |
57DAP/reference | 1.53041 | 0.035 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.63141 | 0.069 |
17DAP/reference | 1.73053 | 0.01 |
27DAP/reference | 1.45087 | 0.044 |
39DAP/reference | 1.17986 | 0.316 |
41DAP/reference | 1.27106 | 0.033 |
42DAP/reference | 1.57674 | 0.009 |
43DAP/reference | 2.57471 | 0.055 |
47DAP/reference | 1.89687 | 0.008 |
52DAP/reference | 1.55392 | 0.023 |
57DAP/reference | 1.66536 | 0.02 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.02843 | 1 |
17DAP/reference | 1.2982 | 0.072 |
27DAP/reference | 1.54019 | 0.022 |
39DAP/reference | 1.51693 | 0.007 |
41DAP/reference | 1.48171 | 0.02 |
42DAP/reference | 1.12352 | 0.373 |
43DAP/reference | 1.14989 | 0.355 |
47DAP/reference | 1.34454 | 0.015 |
52DAP/reference | 1.39551 | 0.205 |
57DAP/reference | 0.98941 | 0.633 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.00205 | 1 |
26DAP/20DAP | 2.73905 | 0.238 |
34DAP/26DAP | 2.15114 | 1 |
51DAP/34DAP | 2.19355 | 0.429 |
52DAP/51DAP | 3.0193 | 0.033 |
53DAP/52DAP | 0.50688 | |
55DAP/53DAP | 1.35244 | 0.193 |
57DAP/55DAP | 0.60599 | 0.066 |
62DAP/57DAP | 1.10353 | 0.622 |
68DAP/62DAP | 2.46773 | 0.455 |
68DAP/14DAP | 0.86603 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.23585 | 0.019 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 1.2536 | 0.752 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.76015 | |
Mature Eggplant/Ripe Tomato | 0.92617 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.844 | |
1-1-2/M82 | 0.91698 | 0.804 |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.98149 | 1 |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.10043 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | 0.89311 | |
4-3-2/M82 | 0.90787 | 0.405 |
4-3/M82 | 0.88564 | 1 |
5-3/M82 | 1.16432 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.95301 | |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 0.82167 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.86805 | |
IL2-6/WTpooled | 1.13885 | 0.456 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.77828 | 0.294 |
IL12-4/WTpooled | 0.7383 | 0.71 |
IL1-4/WTpooled | 0.97304 | 1 |
WT/WTpooled | 0.89109 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.92863 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.90309 | 1 |
DC3000/delta hrp 6h | N/A | N/A |
DC3000/delta hrp 12h | 1.03914 | 1 |
DC3000/delta hrp 24h | 1.13644 | 0.502 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.432 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.29156 | 0.204 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | 1.01815 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.9861 | 1 |
Var 0h | 1.21257 | 1 |
Var 12h I row2-row1 | 0.53333 | 0.363 |
Var 12h NI row2-row1 | 0.94136 | 0.82 |
Var 36h I row2-row1 | 1.04897 | 1 |
Var 36h NI row2-row1 | 1.34163 | 0.482 |
Var 60h I row2-row1 | 0.65403 | 0.285 |
Var 60h NI row2-row1 | 0.83302 | 0.932 |
Time course 0hI-0hNI | 0.97006 | 0.845 |
Time course 12hI-12hNI | 1.22631 | 0.201 |
Time course 36hI-36hNI | 0.92559 | 0.33 |
Time course 60hI-60hNI | 1.39725 | 0.013 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | N/A | N/A |
transgenic ySAMdc/azygous control (breaker) | 1.10133 | 1 |
transgenic ySAMdc/azygous control (red) | 1.29757 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00297 | 0.909 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.92979 | 0.789 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.48024 | 0.307 |
Manapal/WT (break) | 1.03281 | 1 |
Manapal/WT (red) | 0.99541 | 0.863 |
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