Expression of 1-1-7.2.10.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.06185 | 0.997 |
27DAP/17DAP | 1.11178 | 0.845 |
39DAP/27DAP | 1.191 | 0.752 |
41DAP/39DAP | 1.34092 | 0.437 |
42DAP/41DAP | 0.91891 | 1 |
43DAP/42DAP | 0.89511 | 0.827 |
47DAP/43DAP | 1.03213 | 0.979 |
52DAP/47DAP | 1.27915 | 0.948 |
57DAP/52DAP | 0.97373 | 0.957 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95546 | 0.422 |
17DAP/reference | 0.97731 | 0.597 |
27DAP/reference | 0.90273 | 0.025 |
39DAP/reference | 1.00128 | 1 |
41DAP/reference | 0.99514 | 1 |
42DAP/reference | 1.06421 | 0.352 |
43DAP/reference | 1.02694 | 0.73 |
47DAP/reference | 0.99333 | 0.535 |
52DAP/reference | 1.05969 | 0.335 |
57DAP/reference | 1.10578 | 0.478 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99151 | 0.826 |
27DAP/17DAP | 1.03574 | 0.915 |
39DAP/27DAP | 1.02759 | 0.874 |
41DAP/39DAP | 0.88242 | 0.617 |
42DAP/41DAP | 1.10159 | 1 |
43DAP/42DAP | 1.09797 | 0.413 |
47DAP/43DAP | 0.89441 | 0.286 |
52DAP/47DAP | 1.0832 | 0.749 |
57DAP/52DAP | 0.77003 | 0.144 |
57DAP/7DAP | 0.8099 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83464 | 0.115 |
17DAP/reference | 0.8724 | 0.064 |
27DAP/reference | 1.01274 | 1 |
39DAP/reference | 0.74981 | 0.011 |
41DAP/reference | 0.80657 | 0.018 |
42DAP/reference | 0.98688 | 0.531 |
43DAP/reference | 0.67016 | 0.016 |
47DAP/reference | 0.78875 | 0.101 |
52DAP/reference | 0.72148 | 0.014 |
57DAP/reference | 0.70441 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37636 | 0.06 |
17DAP/reference | 1.32479 | 0.011 |
27DAP/reference | 1.24107 | 0.097 |
39DAP/reference | 0.97705 | 0.526 |
41DAP/reference | 1.09576 | 0.228 |
42DAP/reference | 1.26115 | 0.019 |
43DAP/reference | 1.78752 | 0.013 |
47DAP/reference | 1.3918 | 0.008 |
52DAP/reference | 1.08445 | 0.498 |
57DAP/reference | 1.43955 | 0.182 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.82223 | 0.082 |
17DAP/reference | 1.02149 | 0.918 |
27DAP/reference | 0.78147 | 0.047 |
39DAP/reference | 0.79569 | 0.031 |
41DAP/reference | 1.03747 | 1 |
42DAP/reference | 1.15643 | 0.364 |
43DAP/reference | 0.97237 | 0.545 |
47DAP/reference | 1.14412 | 0.055 |
52DAP/reference | 0.91685 | 0.472 |
57DAP/reference | 1.03442 | 0.892 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16141 | 0.966 |
26DAP/20DAP | 0.8888 | 1 |
34DAP/26DAP | 1.05895 | 1 |
51DAP/34DAP | 0.92269 | 0.743 |
52DAP/51DAP | 1.09738 | 0.954 |
53DAP/52DAP | 1.10151 | 0.901 |
55DAP/53DAP | 1.21002 | 0.834 |
57DAP/55DAP | 1.40388 | 0.407 |
62DAP/57DAP | 1.26144 | 0.35 |
68DAP/62DAP | 1.33244 | 0.272 |
68DAP/14DAP | 1.06456 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.33884 | 0.049 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.54279 | 0.149 |
Mature Green Tomato/Ripe Tomato | 1.65531 | 0.523 |
Immature Eggplant/Mature Eggplant | 1.44794 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.21932 | 1 |
Mature Eggplant/Ripe Tomato | 0.81316 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.17773 | 0.536 |
1-1-2/M82 | 1.1274 | 1 |
12-2/M82 | 1.00687 | |
12-4/M82 | 1.02806 | 1 |
1-3/M82 | 0.93521 | 1 |
2-1-1/M82 | 1.05374 | 1 |
2-1/M82 | N/A | N/A |
2-6/M82 | 0.98192 | 1 |
3-2/M82 | 0.9655 | 1 |
4-1-1/M82 | 0.98084 | 1 |
4-1/M82 | 0.82709 | 1 |
4-3-2/M82 | 0.7452 | 0.487 |
4-3/M82 | 0.94639 | 1 |
5-3/M82 | 0.96874 | 0.447 |
6-2/M82 | 0.80344 | 1 |
6-3/M82 | 0.95673 | 1 |
7-1/M82 | 0.88171 | |
7-2/M82 | 0.92627 | 0.881 |
9-3-2/M82 | 0.90954 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.18738 | 0.456 |
IL7-5/WTpooled | 0.63339 | |
IL7-3/WTpooled | 0.80438 | 0.418 |
IL12-4/WTpooled | 1.20383 | 0.595 |
IL1-4/WTpooled | 1.07679 | 1 |
WT/WTpooled | 0.96499 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.32872 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01909 | 1 |
DC3000/delta hrp 6h | 1.03783 | 1 |
DC3000/delta hrp 12h | 0.90561 | 1 |
DC3000/delta hrp 24h | 1.0287 | 0.673 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.92693 | 0.328 |
Exp 36h | 1.73878 | 1 |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.891 | 1 |
Var 0h | 0.71949 | 0.374 |
Var 12h I row2-row1 | 1.03921 | 0.613 |
Var 12h NI row2-row1 | 0.76806 | 0.466 |
Var 36h I row2-row1 | 0.89686 | 0.374 |
Var 36h NI row2-row1 | 1.79421 | 1 |
Var 60h I row2-row1 | 1.08195 | 1 |
Var 60h NI row2-row1 | 0.92756 | 1 |
Time course 0hI-0hNI | 0.9987 | 1 |
Time course 12hI-12hNI | 0.95126 | 0.711 |
Time course 36hI-36hNI | 0.87487 | 0.043 |
Time course 60hI-60hNI | 0.90219 | 0.026 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.8344 | 0.26 |
transgenic ySAMdc/azygous control (breaker) | 0.89656 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.96079 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.00772 | 0.687 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.08875 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.77283 | 1 |
Manapal/WT (break) | 0.54191 | 0.299 |
Manapal/WT (red) | 0.80173 | 0.181 |
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