Expression of 1-1-7.2.10.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.061850.997
27DAP/17DAP1.111780.845
39DAP/27DAP1.1910.752
41DAP/39DAP1.340920.437
42DAP/41DAP0.918911
43DAP/42DAP0.895110.827
47DAP/43DAP1.032130.979
52DAP/47DAP1.279150.948
57DAP/52DAP0.973730.957

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.955460.422
17DAP/reference0.977310.597
27DAP/reference0.902730.025
39DAP/reference1.001281
41DAP/reference0.995141
42DAP/reference1.064210.352
43DAP/reference1.026940.73
47DAP/reference0.993330.535
52DAP/reference1.059690.335
57DAP/reference1.105780.478

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.991510.826
27DAP/17DAP1.035740.915
39DAP/27DAP1.027590.874
41DAP/39DAP0.882420.617
42DAP/41DAP1.101591
43DAP/42DAP1.097970.413
47DAP/43DAP0.894410.286
52DAP/47DAP1.08320.749
57DAP/52DAP0.770030.144
57DAP/7DAP0.80991

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834640.115
17DAP/reference0.87240.064
27DAP/reference1.012741
39DAP/reference0.749810.011
41DAP/reference0.806570.018
42DAP/reference0.986880.531
43DAP/reference0.670160.016
47DAP/reference0.788750.101
52DAP/reference0.721480.014
57DAP/reference0.704410.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.376360.06
17DAP/reference1.324790.011
27DAP/reference1.241070.097
39DAP/reference0.977050.526
41DAP/reference1.095760.228
42DAP/reference1.261150.019
43DAP/reference1.787520.013
47DAP/reference1.39180.008
52DAP/reference1.084450.498
57DAP/reference1.439550.182

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.822230.082
17DAP/reference1.021490.918
27DAP/reference0.781470.047
39DAP/reference0.795690.031
41DAP/reference1.037471
42DAP/reference1.156430.364
43DAP/reference0.972370.545
47DAP/reference1.144120.055
52DAP/reference0.916850.472
57DAP/reference1.034420.892

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.161410.966
26DAP/20DAP0.88881
34DAP/26DAP1.058951
51DAP/34DAP0.922690.743
52DAP/51DAP1.097380.954
53DAP/52DAP1.101510.901
55DAP/53DAP1.210020.834
57DAP/55DAP1.403880.407
62DAP/57DAP1.261440.35
68DAP/62DAP1.332440.272
68DAP/14DAP1.064561

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.338840.049

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.542790.149
Mature Green Tomato/Ripe Tomato1.655310.523
Immature Eggplant/Mature Eggplant1.447940.05
Ripe Pepper/Ripe Tomato1.219321
Mature Eggplant/Ripe Tomato0.813161

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.177730.536
1-1-2/M821.12741
12-2/M821.00687
12-4/M821.028061
1-3/M820.935211
2-1-1/M821.053741
2-1/M82N/AN/A
2-6/M820.981921
3-2/M820.96551
4-1-1/M820.980841
4-1/M820.827091
4-3-2/M820.74520.487
4-3/M820.946391
5-3/M820.968740.447
6-2/M820.803441
6-3/M820.956731
7-1/M820.88171
7-2/M820.926270.881
9-3-2/M820.909541

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.187380.456
IL7-5/WTpooled0.63339
IL7-3/WTpooled0.804380.418
IL12-4/WTpooled1.203830.595
IL1-4/WTpooled1.076791
WT/WTpooled0.964991

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.328720.479

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.019091
DC3000/delta hrp 6h1.037831
DC3000/delta hrp 12h0.905611
DC3000/delta hrp 24h1.02870.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.926930.328
Exp 36h1.738781
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.8911
Var 0h0.719490.374
Var 12h I row2-row11.039210.613
Var 12h NI row2-row10.768060.466
Var 36h I row2-row10.896860.374
Var 36h NI row2-row11.794211
Var 60h I row2-row11.081951
Var 60h NI row2-row10.927561
Time course 0hI-0hNI0.99871
Time course 12hI-12hNI0.951260.711
Time course 36hI-36hNI0.874870.043
Time course 60hI-60hNI0.902190.026

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.83440.26
transgenic ySAMdc/azygous control (breaker)0.896560.49
transgenic ySAMdc/azygous control (red)0.960791

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.007720.687

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.088751

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.772831
Manapal/WT (break)0.541910.299
Manapal/WT (red)0.801730.181