Expression of 1-1-7.2.11.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.99068 | 0.779 |
27DAP/17DAP | 1.10603 | 0.859 |
39DAP/27DAP | 1.05574 | 1 |
41DAP/39DAP | 1.15926 | 0.38 |
42DAP/41DAP | 0.97781 | 1 |
43DAP/42DAP | 1.11136 | 0.91 |
47DAP/43DAP | 1.00861 | 0.966 |
52DAP/47DAP | 0.78783 | 0.461 |
57DAP/52DAP | 1.06689 | 0.72 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91114 | 0.601 |
17DAP/reference | 0.79927 | |
27DAP/reference | 0.97711 | 0.822 |
39DAP/reference | 0.81148 | 0.412 |
41DAP/reference | 0.92309 | |
42DAP/reference | 1.09172 | 0.842 |
43DAP/reference | 0.53458 | |
47DAP/reference | 1.01936 | 0.72 |
52DAP/reference | 0.79341 | 0.33 |
57DAP/reference | 0.57641 | 0.21 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.79578 | 0.121 |
27DAP/17DAP | 0.95457 | 0.878 |
39DAP/27DAP | 1.43803 | 0.056 |
41DAP/39DAP | 1.14308 | 0.817 |
42DAP/41DAP | 0.9067 | 0.434 |
43DAP/42DAP | 1.38577 | 0.021 |
47DAP/43DAP | 1.07467 | 0.772 |
52DAP/47DAP | 1.00361 | 0.982 |
57DAP/52DAP | 1.04087 | 0.891 |
57DAP/7DAP | 1.02199 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.70187 | 0.025 |
17DAP/reference | 1.46699 | 0.008 |
27DAP/reference | 1.30819 | 0.008 |
39DAP/reference | 1.79907 | 0.006 |
41DAP/reference | 1.73264 | 0.01 |
42DAP/reference | 1.76751 | 0.024 |
43DAP/reference | 1.99501 | 0.007 |
47DAP/reference | 1.85721 | 0.017 |
52DAP/reference | 1.63725 | 0.007 |
57DAP/reference | 1.74239 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39583 | 0.384 |
17DAP/reference | 0.96326 | 0.474 |
27DAP/reference | 0.966 | 0.537 |
39DAP/reference | 0.92876 | 0.339 |
41DAP/reference | 0.96678 | 0.459 |
42DAP/reference | 0.90453 | 0.392 |
43DAP/reference | 0.82443 | 0.152 |
47DAP/reference | 1.36001 | 0.054 |
52DAP/reference | 0.95942 | 0.156 |
57DAP/reference | 1.04401 | 0.705 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40594 | 0.019 |
17DAP/reference | 1.15757 | 0.488 |
27DAP/reference | 1.68351 | 0.019 |
39DAP/reference | 1.35512 | 1 |
41DAP/reference | 1.28978 | 0.013 |
42DAP/reference | 1.08424 | 0.327 |
43DAP/reference | 1.45467 | 0.027 |
47DAP/reference | N/A | N/A |
52DAP/reference | 1.65273 | 0.04 |
57DAP/reference | N/A | N/A |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04832 | 0.945 |
26DAP/20DAP | 0.83814 | 0.512 |
34DAP/26DAP | 1.16002 | 0.542 |
51DAP/34DAP | 0.9621 | 0.747 |
52DAP/51DAP | 0.94906 | 1 |
53DAP/52DAP | 1.20396 | 0.343 |
55DAP/53DAP | 1.24478 | 0.312 |
57DAP/55DAP | 1.14295 | 0.969 |
62DAP/57DAP | 1.20274 | 0.868 |
68DAP/62DAP | 1.0907 | 0.962 |
68DAP/14DAP | 1.06246 | 0.889 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.93198 | 0.358 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.73979 | 0.223 |
Mature Green Tomato/Ripe Tomato | 0.95779 | 0.569 |
Immature Eggplant/Mature Eggplant | 1.2341 | 0.288 |
Ripe Pepper/Ripe Tomato | 1.92841 | 1 |
Mature Eggplant/Ripe Tomato | 1.78342 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05129 | 1 |
1-1-2/M82 | 1.01278 | 1 |
12-2/M82 | 0.96574 | 0.955 |
12-4/M82 | 0.90523 | 0.619 |
1-3/M82 | 0.9198 | 0.378 |
2-1-1/M82 | 1.00031 | 1 |
2-1/M82 | 1.16642 | 1 |
2-6/M82 | 0.91806 | 1 |
3-2/M82 | 1.05271 | 0.84 |
4-1-1/M82 | 1.07457 | 1 |
4-1/M82 | 0.83588 | 0.737 |
4-3-2/M82 | 0.9882 | 1 |
4-3/M82 | 0.95349 | 1 |
5-3/M82 | 1.0348 | 0.572 |
6-2/M82 | 1.03197 | 1 |
6-3/M82 | 1.01055 | 1 |
7-1/M82 | 0.95983 | 0.803 |
7-2/M82 | 0.92458 | 0.578 |
9-3-2/M82 | 0.79638 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.76835 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.68963 | 0.362 |
IL12-4/WTpooled | 1.12571 | 0.785 |
IL1-4/WTpooled | 1.13997 | 0.395 |
WT/WTpooled | 1.01449 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.71651 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00503 | 1 |
DC3000/delta hrp 6h | 1.16812 | 1 |
DC3000/delta hrp 12h | 1.00229 | 1 |
DC3000/delta hrp 24h | 0.98252 | 0.934 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9842 | |
DC3000 delta B/DC3000 delta AB | 1.07696 | 0.524 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | N/A | N/A |
Exp 36h | N/A | N/A |
Exp 60h | N/A | N/A |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.95283 | 1 |
Var 0h | 0.97003 | 1 |
Var 12h I row2-row1 | 0.99873 | 1 |
Var 12h NI row2-row1 | 0.79982 | 0.438 |
Var 36h I row2-row1 | 1.19801 | 0.908 |
Var 36h NI row2-row1 | 1.18928 | 0.482 |
Var 60h I row2-row1 | 1.18427 | 0.562 |
Var 60h NI row2-row1 | 1.26156 | 0.904 |
Time course 0hI-0hNI | 0.97513 | 0.898 |
Time course 12hI-12hNI | 1.0674 | 0.741 |
Time course 36hI-36hNI | 0.98958 | 0.654 |
Time course 60hI-60hNI | 1.29358 | 0.042 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.83289 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.42446 | 1 |
transgenic ySAMdc/azygous control (red) | 1.22227 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | N/A | N/A |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.16696 | 1 |
Manapal/WT (break) | 1.11608 | 1 |
Manapal/WT (red) | 0.96589 | 0.728 |
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