Expression of 1-1-7.2.11.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.380930.381
27DAP/17DAP1.348010.656
39DAP/27DAP1.087520.915
41DAP/39DAP1.096180.451
42DAP/41DAP1.05010.994
43DAP/42DAP1.113140.88
47DAP/43DAP1.339010.273
52DAP/47DAP1.110920.937
57DAP/52DAP1.117670.787

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.775770.085
17DAP/reference1.203120.1
27DAP/reference1.519290.091
39DAP/reference1.108580.581
41DAP/reference1.113950.221
42DAP/reference1.144720.366
43DAP/reference1.094460.425
47DAP/reference1.199110.02
52DAP/reference1.397870.009
57DAP/reference1.168180.136

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.264580.114
27DAP/17DAP1.026340.995
39DAP/27DAP1.234020.103
41DAP/39DAP0.812110.193
42DAP/41DAP1.04450.904
43DAP/42DAP0.924280.308
47DAP/43DAP0.944950.637
52DAP/47DAP1.009170.991
57DAP/52DAP1.075010.589
57DAP/7DAP1.735230.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.815780.066
17DAP/reference0.977280.518
27DAP/reference1.070020.664
39DAP/reference0.806640.021
41DAP/reference0.782360.013
42DAP/reference0.863230.014
43DAP/reference0.794130.014
47DAP/reference0.723210.03
52DAP/reference0.806510.043
57DAP/reference0.792780.009

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.924660.457
17DAP/reference0.957130.561
27DAP/reference0.98820.619
39DAP/reference1.149690.67
41DAP/reference0.981790.505
42DAP/reference0.906780.237
43DAP/reference0.808730.095
47DAP/reference0.901480.123
52DAP/reference0.757450.006
57DAP/reference0.911710.408

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.851920.074
17DAP/reference0.909390.364
27DAP/reference0.89750.126
39DAP/reference0.803770.007
41DAP/reference0.911840.028
42DAP/reference0.973290.671
43DAP/reference1.033980.84
47DAP/reference1.04731
52DAP/reference0.966240.65
57DAP/reference1.248520.138

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.977371
26DAP/20DAP0.933151
34DAP/26DAP1.03121
51DAP/34DAP0.91130.667
52DAP/51DAP0.870271
53DAP/52DAP1.100680.895
55DAP/53DAP1.117770.848
57DAP/55DAP1.109970.947
62DAP/57DAP1.355010.393
68DAP/62DAP1.375150.657
68DAP/14DAP1.026771

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.582520.068

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.863680.058
Mature Green Tomato/Ripe Tomato0.8140.182
Immature Eggplant/Mature Eggplant0.84930.081
Ripe Pepper/Ripe Tomato0.262070.224
Mature Eggplant/Ripe Tomato1.308981

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.724230.69
1-1-2/M821.009841
12-2/M820.821250.678
12-4/M820.826330.619
1-3/M821.112430.248
2-1-1/M821.096190.764
2-1/M821.198711
2-6/M821.077240.695
3-2/M820.81056
4-1-1/M821.373131
4-1/M820.94441
4-3-2/M821.076621
4-3/M821.13351
5-3/M821.119641
6-2/M820.877661
6-3/M820.957611
7-1/M820.972470.443
7-2/M821.213650.318
9-3-2/M821.16901

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.928791
IL2-6/WTpooled1.117250.419
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.819370.418
IL12-4/WTpooled0.989911
IL1-4/WTpooled0.921621
WT/WTpooled1.016551

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.14790.699

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.083471
DC3000/delta hrp 6h1.045421
DC3000/delta hrp 12h1.088431
DC3000/delta hrp 24h0.982220.91

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB1.270760.636

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.182351
Exp 36h1.077261
Exp 60h0.767070.454

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.985781
Var 0h1.143170.936
Var 12h I row2-row10.976760.948
Var 12h NI row2-row11.072610.649
Var 36h I row2-row11.023871
Var 36h NI row2-row10.833760.478
Var 60h I row2-row11.15821
Var 60h NI row2-row10.918180.932
Time course 0hI-0hNI1.004511
Time course 12hI-12hNI1.013690.824
Time course 36hI-36hNI1.152460.014
Time course 60hI-60hNI1.619360.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.912010.314
transgenic ySAMdc/azygous control (breaker)1.028531
transgenic ySAMdc/azygous control (red)0.980731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.850950.081

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.041821

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.686290.172
Manapal/WT (break)0.705830.333
Manapal/WT (red)1.019621