Expression of 1-1-7.2.11.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.38093 | 0.381 |
27DAP/17DAP | 1.34801 | 0.656 |
39DAP/27DAP | 1.08752 | 0.915 |
41DAP/39DAP | 1.09618 | 0.451 |
42DAP/41DAP | 1.0501 | 0.994 |
43DAP/42DAP | 1.11314 | 0.88 |
47DAP/43DAP | 1.33901 | 0.273 |
52DAP/47DAP | 1.11092 | 0.937 |
57DAP/52DAP | 1.11767 | 0.787 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.77577 | 0.085 |
17DAP/reference | 1.20312 | 0.1 |
27DAP/reference | 1.51929 | 0.091 |
39DAP/reference | 1.10858 | 0.581 |
41DAP/reference | 1.11395 | 0.221 |
42DAP/reference | 1.14472 | 0.366 |
43DAP/reference | 1.09446 | 0.425 |
47DAP/reference | 1.19911 | 0.02 |
52DAP/reference | 1.39787 | 0.009 |
57DAP/reference | 1.16818 | 0.136 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.26458 | 0.114 |
27DAP/17DAP | 1.02634 | 0.995 |
39DAP/27DAP | 1.23402 | 0.103 |
41DAP/39DAP | 0.81211 | 0.193 |
42DAP/41DAP | 1.0445 | 0.904 |
43DAP/42DAP | 0.92428 | 0.308 |
47DAP/43DAP | 0.94495 | 0.637 |
52DAP/47DAP | 1.00917 | 0.991 |
57DAP/52DAP | 1.07501 | 0.589 |
57DAP/7DAP | 1.73523 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.81578 | 0.066 |
17DAP/reference | 0.97728 | 0.518 |
27DAP/reference | 1.07002 | 0.664 |
39DAP/reference | 0.80664 | 0.021 |
41DAP/reference | 0.78236 | 0.013 |
42DAP/reference | 0.86323 | 0.014 |
43DAP/reference | 0.79413 | 0.014 |
47DAP/reference | 0.72321 | 0.03 |
52DAP/reference | 0.80651 | 0.043 |
57DAP/reference | 0.79278 | 0.009 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.92466 | 0.457 |
17DAP/reference | 0.95713 | 0.561 |
27DAP/reference | 0.9882 | 0.619 |
39DAP/reference | 1.14969 | 0.67 |
41DAP/reference | 0.98179 | 0.505 |
42DAP/reference | 0.90678 | 0.237 |
43DAP/reference | 0.80873 | 0.095 |
47DAP/reference | 0.90148 | 0.123 |
52DAP/reference | 0.75745 | 0.006 |
57DAP/reference | 0.91171 | 0.408 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85192 | 0.074 |
17DAP/reference | 0.90939 | 0.364 |
27DAP/reference | 0.8975 | 0.126 |
39DAP/reference | 0.80377 | 0.007 |
41DAP/reference | 0.91184 | 0.028 |
42DAP/reference | 0.97329 | 0.671 |
43DAP/reference | 1.03398 | 0.84 |
47DAP/reference | 1.0473 | 1 |
52DAP/reference | 0.96624 | 0.65 |
57DAP/reference | 1.24852 | 0.138 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97737 | 1 |
26DAP/20DAP | 0.93315 | 1 |
34DAP/26DAP | 1.0312 | 1 |
51DAP/34DAP | 0.9113 | 0.667 |
52DAP/51DAP | 0.87027 | 1 |
53DAP/52DAP | 1.10068 | 0.895 |
55DAP/53DAP | 1.11777 | 0.848 |
57DAP/55DAP | 1.10997 | 0.947 |
62DAP/57DAP | 1.35501 | 0.393 |
68DAP/62DAP | 1.37515 | 0.657 |
68DAP/14DAP | 1.02677 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.58252 | 0.068 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.86368 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.814 | 0.182 |
Immature Eggplant/Mature Eggplant | 0.8493 | 0.081 |
Ripe Pepper/Ripe Tomato | 0.26207 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.30898 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.72423 | 0.69 |
1-1-2/M82 | 1.00984 | 1 |
12-2/M82 | 0.82125 | 0.678 |
12-4/M82 | 0.82633 | 0.619 |
1-3/M82 | 1.11243 | 0.248 |
2-1-1/M82 | 1.09619 | 0.764 |
2-1/M82 | 1.19871 | 1 |
2-6/M82 | 1.07724 | 0.695 |
3-2/M82 | 0.81056 | |
4-1-1/M82 | 1.37313 | 1 |
4-1/M82 | 0.9444 | 1 |
4-3-2/M82 | 1.07662 | 1 |
4-3/M82 | 1.1335 | 1 |
5-3/M82 | 1.11964 | 1 |
6-2/M82 | 0.87766 | 1 |
6-3/M82 | 0.95761 | 1 |
7-1/M82 | 0.97247 | 0.443 |
7-2/M82 | 1.21365 | 0.318 |
9-3-2/M82 | 1.16901 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92879 | 1 |
IL2-6/WTpooled | 1.11725 | 0.419 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.81937 | 0.418 |
IL12-4/WTpooled | 0.98991 | 1 |
IL1-4/WTpooled | 0.92162 | 1 |
WT/WTpooled | 1.01655 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.1479 | 0.699 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.08347 | 1 |
DC3000/delta hrp 6h | 1.04542 | 1 |
DC3000/delta hrp 12h | 1.08843 | 1 |
DC3000/delta hrp 24h | 0.98222 | 0.91 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 1.27076 | 0.636 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.18235 | 1 |
Exp 36h | 1.07726 | 1 |
Exp 60h | 0.76707 | 0.454 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98578 | 1 |
Var 0h | 1.14317 | 0.936 |
Var 12h I row2-row1 | 0.97676 | 0.948 |
Var 12h NI row2-row1 | 1.07261 | 0.649 |
Var 36h I row2-row1 | 1.02387 | 1 |
Var 36h NI row2-row1 | 0.83376 | 0.478 |
Var 60h I row2-row1 | 1.1582 | 1 |
Var 60h NI row2-row1 | 0.91818 | 0.932 |
Time course 0hI-0hNI | 1.00451 | 1 |
Time course 12hI-12hNI | 1.01369 | 0.824 |
Time course 36hI-36hNI | 1.15246 | 0.014 |
Time course 60hI-60hNI | 1.61936 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91201 | 0.314 |
transgenic ySAMdc/azygous control (breaker) | 1.02853 | 1 |
transgenic ySAMdc/azygous control (red) | 0.98073 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.85095 | 0.081 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.04182 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.68629 | 0.172 |
Manapal/WT (break) | 0.70583 | 0.333 |
Manapal/WT (red) | 1.01962 | 1 |
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