Expression of 1-1-7.2.12.18

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.075330.961
27DAP/17DAP1.80770.606
39DAP/27DAP0.992640.82
41DAP/39DAP0.921590.743
42DAP/41DAP0.76651
43DAP/42DAP0.805370.743
47DAP/43DAP0.891620.625
52DAP/47DAP1.287490.844
57DAP/52DAP1.240840.977

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.132120.197
17DAP/reference1.030130.33
27DAP/reference0.957360.187
39DAP/reference1.008010.842
41DAP/reference0.995761
42DAP/reference1.079970.084
43DAP/reference0.997420.904
47DAP/reference1.032970.448
52DAP/reference0.97890.504
57DAP/reference1.021610.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.891040.719
27DAP/17DAP0.836520.58
39DAP/27DAP0.88750.55
41DAP/39DAP1.320540.531
42DAP/41DAP0.748590.161
43DAP/42DAP1.122510.664
47DAP/43DAP1.405540.444
52DAP/47DAP1.382360.308
57DAP/52DAP1.309220.596
57DAP/7DAP0.97063

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.375260.043
17DAP/reference1.908550.008
27DAP/reference1.885350.006
39DAP/reference2.357020.006
41DAP/reference2.34740.01
42DAP/reference3.011030.006
43DAP/reference2.665210.006
47DAP/reference1.52410.161
52DAP/reference1.93410.007
57DAP/reference1.946330.005

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.069770.484
17DAP/reference1.143920.032
27DAP/reference1.141870.174
39DAP/reference1.10070.281
41DAP/reference1.052820.925
42DAP/reference1.024331
43DAP/reference1.06750.777
47DAP/reference1.0280.965
52DAP/reference1.030060.444
57DAP/reference1.166080.048

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.480750.028
17DAP/reference1.232030.321
27DAP/reference1.463370.022
39DAP/reference1.503370.014
41DAP/reference1.549110.018
42DAP/reference1.339580.028
43DAP/reference1.621960.011
47DAP/reference0.959250.335
52DAP/reference1.76880.056
57DAP/reference1.31880.274

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP2.900480.966
26DAP/20DAP1.688680.357
34DAP/26DAP0.991861
51DAP/34DAP1.331840.927
52DAP/51DAP0.836581
53DAP/52DAP0.585270.068
55DAP/53DAP0.950280.735
57DAP/55DAP1.190150.865
62DAP/57DAP0.820050.28
68DAP/62DAP0.9590.81
68DAP/14DAP0.54280.121

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.693690.211

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.91430.491
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.578490.05
Ripe Pepper/Ripe Tomato0.980031
Mature Eggplant/Ripe Tomato0.6550.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.946530.944
1-1-2/M821.159821
12-2/M821.006251
12-4/M820.97281
1-3/M820.755651
2-1-1/M821.032611
2-1/M820.954690.519
2-6/M821.07840.695
3-2/M820.88635
4-1-1/M821.036591
4-1/M821.32493
4-3-2/M821.53362
4-3/M821.419550.268
5-3/M821.131091
6-2/M82N/AN/A
6-3/M820.70687
7-1/M820.926560.803
7-2/M821.014981
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.953821
IL2-6/WTpooled1.015111
IL7-5/WTpooled0.54158
IL7-3/WTpooled1.198810.362
IL12-4/WTpooled1.063730.737
IL1-4/WTpooled1.208971
WT/WTpooled0.971331

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.042421

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.11080.692
DC3000/delta hrp 6h0.994480.95
DC3000/delta hrp 12h1.042771
DC3000/delta hrp 24h1.058120.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.12830.16
DC3000 delta B/DC3000 delta AB1.171890.353

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.966271
Exp 36h1.230380.693
Exp 60h1.012821

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.974721
Var 0h0.902420.933
Var 12h I row2-row10.997811
Var 12h NI row2-row10.905880.906
Var 36h I row2-row11.235520.298
Var 36h NI row2-row11.926440.791
Var 60h I row2-row10.812980.374
Var 60h NI row2-row10.950911
Time course 0hI-0hNI1.105480.537
Time course 12hI-12hNI1.077870.381
Time course 36hI-36hNI1.358290.008
Time course 60hI-60hNI1.830630.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.024110.612
transgenic ySAMdc/azygous control (breaker)1.109711
transgenic ySAMdc/azygous control (red)1.13180.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.084380.13

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.936330.284

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.912631
Manapal/WT (break)1.218051
Manapal/WT (red)1.229310.222