Expression of 1-1-7.2.12.18
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.07533 | 0.961 |
27DAP/17DAP | 1.8077 | 0.606 |
39DAP/27DAP | 0.99264 | 0.82 |
41DAP/39DAP | 0.92159 | 0.743 |
42DAP/41DAP | 0.7665 | 1 |
43DAP/42DAP | 0.80537 | 0.743 |
47DAP/43DAP | 0.89162 | 0.625 |
52DAP/47DAP | 1.28749 | 0.844 |
57DAP/52DAP | 1.24084 | 0.977 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13212 | 0.197 |
17DAP/reference | 1.03013 | 0.33 |
27DAP/reference | 0.95736 | 0.187 |
39DAP/reference | 1.00801 | 0.842 |
41DAP/reference | 0.99576 | 1 |
42DAP/reference | 1.07997 | 0.084 |
43DAP/reference | 0.99742 | 0.904 |
47DAP/reference | 1.03297 | 0.448 |
52DAP/reference | 0.9789 | 0.504 |
57DAP/reference | 1.02161 | 0.802 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.89104 | 0.719 |
27DAP/17DAP | 0.83652 | 0.58 |
39DAP/27DAP | 0.8875 | 0.55 |
41DAP/39DAP | 1.32054 | 0.531 |
42DAP/41DAP | 0.74859 | 0.161 |
43DAP/42DAP | 1.12251 | 0.664 |
47DAP/43DAP | 1.40554 | 0.444 |
52DAP/47DAP | 1.38236 | 0.308 |
57DAP/52DAP | 1.30922 | 0.596 |
57DAP/7DAP | 0.97063 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37526 | 0.043 |
17DAP/reference | 1.90855 | 0.008 |
27DAP/reference | 1.88535 | 0.006 |
39DAP/reference | 2.35702 | 0.006 |
41DAP/reference | 2.3474 | 0.01 |
42DAP/reference | 3.01103 | 0.006 |
43DAP/reference | 2.66521 | 0.006 |
47DAP/reference | 1.5241 | 0.161 |
52DAP/reference | 1.9341 | 0.007 |
57DAP/reference | 1.94633 | 0.005 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.06977 | 0.484 |
17DAP/reference | 1.14392 | 0.032 |
27DAP/reference | 1.14187 | 0.174 |
39DAP/reference | 1.1007 | 0.281 |
41DAP/reference | 1.05282 | 0.925 |
42DAP/reference | 1.02433 | 1 |
43DAP/reference | 1.0675 | 0.777 |
47DAP/reference | 1.028 | 0.965 |
52DAP/reference | 1.03006 | 0.444 |
57DAP/reference | 1.16608 | 0.048 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.48075 | 0.028 |
17DAP/reference | 1.23203 | 0.321 |
27DAP/reference | 1.46337 | 0.022 |
39DAP/reference | 1.50337 | 0.014 |
41DAP/reference | 1.54911 | 0.018 |
42DAP/reference | 1.33958 | 0.028 |
43DAP/reference | 1.62196 | 0.011 |
47DAP/reference | 0.95925 | 0.335 |
52DAP/reference | 1.7688 | 0.056 |
57DAP/reference | 1.3188 | 0.274 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 2.90048 | 0.966 |
26DAP/20DAP | 1.68868 | 0.357 |
34DAP/26DAP | 0.99186 | 1 |
51DAP/34DAP | 1.33184 | 0.927 |
52DAP/51DAP | 0.83658 | 1 |
53DAP/52DAP | 0.58527 | 0.068 |
55DAP/53DAP | 0.95028 | 0.735 |
57DAP/55DAP | 1.19015 | 0.865 |
62DAP/57DAP | 0.82005 | 0.28 |
68DAP/62DAP | 0.959 | 0.81 |
68DAP/14DAP | 0.5428 | 0.121 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.69369 | 0.211 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.9143 | 0.491 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.57849 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.98003 | 1 |
Mature Eggplant/Ripe Tomato | 0.655 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.94653 | 0.944 |
1-1-2/M82 | 1.15982 | 1 |
12-2/M82 | 1.00625 | 1 |
12-4/M82 | 0.9728 | 1 |
1-3/M82 | 0.75565 | 1 |
2-1-1/M82 | 1.03261 | 1 |
2-1/M82 | 0.95469 | 0.519 |
2-6/M82 | 1.0784 | 0.695 |
3-2/M82 | 0.88635 | |
4-1-1/M82 | 1.03659 | 1 |
4-1/M82 | 1.32493 | |
4-3-2/M82 | 1.53362 | |
4-3/M82 | 1.41955 | 0.268 |
5-3/M82 | 1.13109 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | 0.70687 | |
7-1/M82 | 0.92656 | 0.803 |
7-2/M82 | 1.01498 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.95382 | 1 |
IL2-6/WTpooled | 1.01511 | 1 |
IL7-5/WTpooled | 0.54158 | |
IL7-3/WTpooled | 1.19881 | 0.362 |
IL12-4/WTpooled | 1.06373 | 0.737 |
IL1-4/WTpooled | 1.20897 | 1 |
WT/WTpooled | 0.97133 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.04242 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.1108 | 0.692 |
DC3000/delta hrp 6h | 0.99448 | 0.95 |
DC3000/delta hrp 12h | 1.04277 | 1 |
DC3000/delta hrp 24h | 1.05812 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.1283 | 0.16 |
DC3000 delta B/DC3000 delta AB | 1.17189 | 0.353 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96627 | 1 |
Exp 36h | 1.23038 | 0.693 |
Exp 60h | 1.01282 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97472 | 1 |
Var 0h | 0.90242 | 0.933 |
Var 12h I row2-row1 | 0.99781 | 1 |
Var 12h NI row2-row1 | 0.90588 | 0.906 |
Var 36h I row2-row1 | 1.23552 | 0.298 |
Var 36h NI row2-row1 | 1.92644 | 0.791 |
Var 60h I row2-row1 | 0.81298 | 0.374 |
Var 60h NI row2-row1 | 0.95091 | 1 |
Time course 0hI-0hNI | 1.10548 | 0.537 |
Time course 12hI-12hNI | 1.07787 | 0.381 |
Time course 36hI-36hNI | 1.35829 | 0.008 |
Time course 60hI-60hNI | 1.83063 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02411 | 0.612 |
transgenic ySAMdc/azygous control (breaker) | 1.10971 | 1 |
transgenic ySAMdc/azygous control (red) | 1.1318 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08438 | 0.13 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.93633 | 0.284 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.91263 | 1 |
Manapal/WT (break) | 1.21805 | 1 |
Manapal/WT (red) | 1.22931 | 0.222 |
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