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Expression of 1-1-7.2.13.11

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.758570.347
27DAP/17DAP0.820230.473
39DAP/27DAP1.729430.094
41DAP/39DAP1.19130.985
42DAP/41DAP1.07381
43DAP/42DAP1.727980.133
47DAP/43DAP0.81110.433
52DAP/47DAP1.049330.932
57DAP/52DAP1.27380.963

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.297630.025
17DAP/reference0.92550.278
27DAP/reference0.780240.24
39DAP/reference1.119020.514
41DAP/reference1.273290.038
42DAP/reference1.222240.009
43DAP/reference1.177490.445
47DAP/reference1.160160.119
52DAP/reference0.983650.636
57DAP/reference1.316130.259

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.805980.251
27DAP/17DAP1.129660.973
39DAP/27DAP1.03650.672
41DAP/39DAP0.936760.959
42DAP/41DAP0.936780.641
43DAP/42DAP0.996250.854
47DAP/43DAP1.170840.708
52DAP/47DAP0.782210.801
57DAP/52DAP0.810750.577
57DAP/7DAP0.928760.143

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.128320.213
17DAP/reference1.262730.022
27DAP/reference1.234130.012
39DAP/reference1.243670.012
41DAP/reference1.334610.012
42DAP/reference1.4390.014
43DAP/reference1.377780.013
47DAP/reference1.252940.021
52DAP/reference1.23110.018
57DAP/reference1.064610.268

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.207640.049
17DAP/reference1.287820.011
27DAP/reference1.149910.102
39DAP/reference1.058530.335
41DAP/reference1.070460.439
42DAP/reference1.035420.794
43DAP/reference1.314020.053
47DAP/reference1.03710.572
52DAP/reference0.990090.576
57DAP/reference1.121530.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.169860.053
17DAP/reference1.048490.511
27DAP/reference0.999560.883
39DAP/reference0.980730.504
41DAP/reference1.169660.276
42DAP/reference1.192650.171
43DAP/reference1.075460.369
47DAP/reference1.125660.04
52DAP/reference1.032760.862
57DAP/reference1.044680.867

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.285320.817
26DAP/20DAP1.038291
34DAP/26DAP0.961541
51DAP/34DAP1.084920.84
52DAP/51DAP1.317220.467
53DAP/52DAP0.877040.621
55DAP/53DAP0.76840.417
57DAP/55DAP1.100010.915
62DAP/57DAP1.049041
68DAP/62DAP0.809490.135
68DAP/14DAP1.202790.521

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.093390.627

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.222310.089
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.088020.267
Ripe Pepper/Ripe Tomato0.632940.224
Mature Eggplant/Ripe Tomato4.107180.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.917130.883
1-1-2/M821.026131
12-2/M820.935030.955
12-4/M821.098850.694
1-3/M820.812620.501
2-1-1/M821.31515N/A
2-1/M821.1854N/A
2-6/M821.24950.505
3-2/M821.11292N/A
4-1-1/M820.96321
4-1/M820.97873N/A
4-3-2/M820.82709N/A
4-3/M820.814750.404
5-3/M820.983491
6-2/M82N/AN/A
6-3/M820.987531
7-1/M820.90795N/A
7-2/M820.90341N/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.077750.659
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.125911
IL12-4/WTpooled1.093020.538
IL1-4/WTpooled1.165790.426
WT/WTpooled1.066220.85

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.918131
DC3000/delta hrp 6h1.034141
DC3000/delta hrp 12h1.119741
DC3000/delta hrp 24h3.025390.024

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.105551
Exp 36h1.157850.693
Exp 60h1.316940.227

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.7818N/A
Var 0h0.900770.457
Var 12h I row2-row10.886840.467
Var 12h NI row2-row10.799360.713
Var 36h I row2-row10.29298N/A
Var 36h NI row2-row11.474481
Var 60h I row2-row11.007731
Var 60h NI row2-row12.366910.904
Time course 0hI-0hNI0.96130.886
Time course 12hI-12hNI0.998920.886
Time course 36hI-36hNI1.080410.975
Time course 60hI-60hNI0.809530.161

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.994210.931
transgenic ySAMdc/azygous control (breaker)0.820860.131
transgenic ySAMdc/azygous control (red)1.000731

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.019590.261

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.908290.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.782170.172
Manapal/WT (break)0.81440.333
Manapal/WT (red)1.089161