Expression of 1-1-7.2.13.2
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.10675 | 0.615 |
27DAP/17DAP | 0.99257 | 0.973 |
39DAP/27DAP | 0.91083 | 0.414 |
41DAP/39DAP | 1.13116 | 0.459 |
42DAP/41DAP | 1.24152 | 0.485 |
43DAP/42DAP | 1.23153 | 0.722 |
47DAP/43DAP | 1.07354 | 0.563 |
52DAP/47DAP | 0.98389 | 0.932 |
57DAP/52DAP | 0.8996 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00411 | 1 |
17DAP/reference | 1.05471 | 0.229 |
27DAP/reference | 1.0368 | 0.487 |
39DAP/reference | 1.09998 | 0.545 |
41DAP/reference | 1.08901 | 0.241 |
42DAP/reference | 1.00076 | 0.645 |
43DAP/reference | 1.02328 | 0.596 |
47DAP/reference | 1.03063 | 0.463 |
52DAP/reference | 1.09798 | 0.407 |
57DAP/reference | 1.00768 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03794 | 0.508 |
27DAP/17DAP | 1.05741 | 0.811 |
39DAP/27DAP | 1.02268 | 0.799 |
41DAP/39DAP | 1.08881 | 0.612 |
42DAP/41DAP | 0.98882 | 0.884 |
43DAP/42DAP | 0.95285 | 0.367 |
47DAP/43DAP | 1.0017 | 1 |
52DAP/47DAP | 0.99329 | 0.951 |
57DAP/52DAP | 1.00553 | 1 |
57DAP/7DAP | 0.97586 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87864 | 0.07 |
17DAP/reference | 0.91772 | 0.011 |
27DAP/reference | 0.89849 | 0.011 |
39DAP/reference | 0.91691 | 0.064 |
41DAP/reference | 0.9196 | 0.07 |
42DAP/reference | 0.99093 | 0.612 |
43DAP/reference | 0.95723 | 0.151 |
47DAP/reference | 0.92991 | 0.128 |
52DAP/reference | 0.93075 | 0.083 |
57DAP/reference | 1.00616 | 1 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98435 | 0.786 |
17DAP/reference | 0.90135 | 0.077 |
27DAP/reference | 0.85857 | 0.09 |
39DAP/reference | 0.89653 | 0.147 |
41DAP/reference | 0.97446 | 0.432 |
42DAP/reference | 1.03306 | 1 |
43DAP/reference | 0.90978 | 0.206 |
47DAP/reference | 1.159 | 0.079 |
52DAP/reference | 0.89733 | 0.078 |
57DAP/reference | 1.00306 | 1 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88219 | 0.047 |
17DAP/reference | 0.99032 | 0.751 |
27DAP/reference | 0.9254 | 0.133 |
39DAP/reference | 0.90964 | 0.101 |
41DAP/reference | 0.8937 | 0.037 |
42DAP/reference | 0.80522 | 0.019 |
43DAP/reference | 0.87448 | 0.098 |
47DAP/reference | 1.07093 | 0.239 |
52DAP/reference | 0.894 | 0.319 |
57DAP/reference | 0.81199 | 0.064 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01844 | 0.966 |
26DAP/20DAP | 0.94636 | 1 |
34DAP/26DAP | 1.03344 | 1 |
51DAP/34DAP | 1.01011 | 0.988 |
52DAP/51DAP | 0.96818 | 1 |
53DAP/52DAP | 1.13962 | 0.121 |
55DAP/53DAP | 0.9276 | 0.807 |
57DAP/55DAP | 1.13029 | 0.898 |
62DAP/57DAP | 1.05596 | 0.678 |
68DAP/62DAP | 1.07088 | 0.878 |
68DAP/14DAP | 0.96679 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.96415 | 0.466 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.67528 | 0.179 |
Mature Green Tomato/Ripe Tomato | 0.89897 | 0.411 |
Immature Eggplant/Mature Eggplant | 1.16078 | 0.379 |
Ripe Pepper/Ripe Tomato | 3.57006 | 1 |
Mature Eggplant/Ripe Tomato | 1.55536 | 0.268 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.08526 | 1 |
1-1-2/M82 | 1.01845 | 1 |
12-2/M82 | 0.97508 | 0.955 |
12-4/M82 | 0.92764 | 0.619 |
1-3/M82 | 0.98853 | 1 |
2-1-1/M82 | 0.98208 | 1 |
2-1/M82 | 1.36519 | 1 |
2-6/M82 | 0.93907 | 1 |
3-2/M82 | 0.98452 | |
4-1-1/M82 | 1.11753 | 0.977 |
4-1/M82 | 0.90924 | 0.737 |
4-3-2/M82 | 0.88125 | 0.698 |
4-3/M82 | 0.98094 | 1 |
5-3/M82 | 1.07996 | 1 |
6-2/M82 | 1.01431 | 1 |
6-3/M82 | 1.0087 | 1 |
7-1/M82 | 0.92268 | |
7-2/M82 | 0.90968 | 0.796 |
9-3-2/M82 | 0.92525 | 0.449 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97409 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.08463 | 1 |
IL12-4/WTpooled | 1.09542 | 0.737 |
IL1-4/WTpooled | 0.86565 | 0.699 |
WT/WTpooled | 1.04504 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.46417 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.07362 | 0.921 |
DC3000/delta hrp 6h | 1.20149 | 1 |
DC3000/delta hrp 12h | 1.05146 | 1 |
DC3000/delta hrp 24h | 1.06735 | 0.483 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.05372 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.04672 | 0.565 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12303 | 1 |
Exp 36h | 1.45478 | 0.693 |
Exp 60h | 1.37927 | 0.221 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97488 | 1 |
Var 0h | 1.16336 | 0.936 |
Var 12h I row2-row1 | 1.10562 | 0.283 |
Var 12h NI row2-row1 | 0.97979 | 0.906 |
Var 36h I row2-row1 | 0.97382 | 1 |
Var 36h NI row2-row1 | 0.93293 | 0.549 |
Var 60h I row2-row1 | 1.19048 | 0.562 |
Var 60h NI row2-row1 | 1.09751 | 0.904 |
Time course 0hI-0hNI | 1.05101 | 0.852 |
Time course 12hI-12hNI | 1.06853 | 0.615 |
Time course 36hI-36hNI | 1.06702 | 0.101 |
Time course 60hI-60hNI | 1.3878 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.95664 | 0.485 |
transgenic ySAMdc/azygous control (breaker) | 1.07743 | 1 |
transgenic ySAMdc/azygous control (red) | 1.02496 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97667 | 0.12 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.65586 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.57625 | 0.093 |
Manapal/WT (break) | 0.90325 | 1 |
Manapal/WT (red) | 0.78797 | 0.216 |
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