Expression of 1-1-7.2.13.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.763770.173
27DAP/17DAP1.04520.91
39DAP/27DAP1.002650.899
41DAP/39DAP0.887640.54
42DAP/41DAP1.056620.938
43DAP/42DAP1.04771
47DAP/43DAP0.930180.746
52DAP/47DAP0.933960.783
57DAP/52DAP0.991680.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.980650.503
17DAP/reference0.958870.419
27DAP/reference0.956460.314
39DAP/reference0.906540.164
41DAP/reference0.955020.341
42DAP/reference1.093560.017
43DAP/reference0.9920.82
47DAP/reference0.981020.418
52DAP/reference0.889740.158
57DAP/reference1.07490.3

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.049880.455
27DAP/17DAP0.998970.969
39DAP/27DAP0.950020.4
41DAP/39DAP0.949520.849
42DAP/41DAP1.018030.886
43DAP/42DAP1.007020.699
47DAP/43DAP0.97010.666
52DAP/47DAP0.939210.472
57DAP/52DAP0.998550.907
57DAP/7DAP0.955051

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.97540.402
17DAP/reference1.029870.754
27DAP/reference1.143680.008
39DAP/reference0.968110.198
41DAP/reference1.050280.363
42DAP/reference1.064910.405
43DAP/reference0.966160.132
47DAP/reference0.900790.101
52DAP/reference0.921610.017
57DAP/reference0.971610.207

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.046760.597
17DAP/reference0.908150.12
27DAP/reference0.957540.407
39DAP/reference0.929490.159
41DAP/reference0.924980.194
42DAP/reference1.009831
43DAP/reference0.9430.257
47DAP/reference1.108210.058
52DAP/reference0.881260.021
57DAP/reference0.972450.46

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.047110.32
17DAP/reference1.035990.488
27DAP/reference1.038040.805
39DAP/reference1.023930.578
41DAP/reference0.996510.826
42DAP/reference0.945110.361
43DAP/reference0.986380.639
47DAP/reference1.004221
52DAP/reference0.97830.718
57DAP/reference0.95190.339

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.026690.966
26DAP/20DAP0.974921
34DAP/26DAP1.053841
51DAP/34DAP0.944870.587
52DAP/51DAP1.020890.848
53DAP/52DAP1.084430.565
55DAP/53DAP1.063450.719
57DAP/55DAP1.304140.626
62DAP/57DAP0.967510.994
68DAP/62DAP1.078880.944
68DAP/14DAP1.303670.211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.995080.814

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.87480.371
Mature Green Tomato/Ripe Tomato0.865970.256
Immature Eggplant/Mature Eggplant1.281730.15
Ripe Pepper/Ripe Tomato0.885641
Mature Eggplant/Ripe Tomato0.808591

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.951160.944
1-1-2/M821.011961
12-2/M820.941290.955
12-4/M820.984821
1-3/M820.936240.441
2-1-1/M820.842530.465
2-1/M821.158031
2-6/M820.955471
3-2/M820.996831
4-1-1/M820.997261
4-1/M821.189361
4-3-2/M820.861080.487
4-3/M820.964861
5-3/M820.980891
6-2/M820.99831
6-3/M821.020021
7-1/M820.957850.803
7-2/M820.887180.796
9-3-2/M820.921161

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.904580.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.19690.362
IL12-4/WTpooled1.05670.595
IL1-4/WTpooled1.11522
WT/WTpooled0.924111

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.996431

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.95911
DC3000/delta hrp 6h1.107220.95
DC3000/delta hrp 12h1.076691
DC3000/delta hrp 24h1.044510.411

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.178170.042
DC3000 delta B/DC3000 delta AB1.072080.423

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.110191
Exp 36h1.06211
Exp 60h1.06381

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.978311
Var 0h1.039640.936
Var 12h I row2-row11.209410.196
Var 12h NI row2-row10.985290.82
Var 36h I row2-row11.091081
Var 36h NI row2-row10.825120.478
Var 60h I row2-row11.070161
Var 60h NI row2-row11.098941
Time course 0hI-0hNI1.008251
Time course 12hI-12hNI1.04810.724
Time course 36hI-36hNI1.042480.881
Time course 60hI-60hNI1.890820.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.917680.362
transgenic ySAMdc/azygous control (breaker)1.090391
transgenic ySAMdc/azygous control (red)1.11410.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.999580.967

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.812870.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.947821
Manapal/WT (break)0.778460.333
Manapal/WT (red)0.835070.181