Expression of 1-1-7.2.13.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76377 | 0.173 |
27DAP/17DAP | 1.0452 | 0.91 |
39DAP/27DAP | 1.00265 | 0.899 |
41DAP/39DAP | 0.88764 | 0.54 |
42DAP/41DAP | 1.05662 | 0.938 |
43DAP/42DAP | 1.0477 | 1 |
47DAP/43DAP | 0.93018 | 0.746 |
52DAP/47DAP | 0.93396 | 0.783 |
57DAP/52DAP | 0.99168 | 0.983 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.98065 | 0.503 |
17DAP/reference | 0.95887 | 0.419 |
27DAP/reference | 0.95646 | 0.314 |
39DAP/reference | 0.90654 | 0.164 |
41DAP/reference | 0.95502 | 0.341 |
42DAP/reference | 1.09356 | 0.017 |
43DAP/reference | 0.992 | 0.82 |
47DAP/reference | 0.98102 | 0.418 |
52DAP/reference | 0.88974 | 0.158 |
57DAP/reference | 1.0749 | 0.3 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.04988 | 0.455 |
27DAP/17DAP | 0.99897 | 0.969 |
39DAP/27DAP | 0.95002 | 0.4 |
41DAP/39DAP | 0.94952 | 0.849 |
42DAP/41DAP | 1.01803 | 0.886 |
43DAP/42DAP | 1.00702 | 0.699 |
47DAP/43DAP | 0.9701 | 0.666 |
52DAP/47DAP | 0.93921 | 0.472 |
57DAP/52DAP | 0.99855 | 0.907 |
57DAP/7DAP | 0.95505 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.9754 | 0.402 |
17DAP/reference | 1.02987 | 0.754 |
27DAP/reference | 1.14368 | 0.008 |
39DAP/reference | 0.96811 | 0.198 |
41DAP/reference | 1.05028 | 0.363 |
42DAP/reference | 1.06491 | 0.405 |
43DAP/reference | 0.96616 | 0.132 |
47DAP/reference | 0.90079 | 0.101 |
52DAP/reference | 0.92161 | 0.017 |
57DAP/reference | 0.97161 | 0.207 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04676 | 0.597 |
17DAP/reference | 0.90815 | 0.12 |
27DAP/reference | 0.95754 | 0.407 |
39DAP/reference | 0.92949 | 0.159 |
41DAP/reference | 0.92498 | 0.194 |
42DAP/reference | 1.00983 | 1 |
43DAP/reference | 0.943 | 0.257 |
47DAP/reference | 1.10821 | 0.058 |
52DAP/reference | 0.88126 | 0.021 |
57DAP/reference | 0.97245 | 0.46 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.04711 | 0.32 |
17DAP/reference | 1.03599 | 0.488 |
27DAP/reference | 1.03804 | 0.805 |
39DAP/reference | 1.02393 | 0.578 |
41DAP/reference | 0.99651 | 0.826 |
42DAP/reference | 0.94511 | 0.361 |
43DAP/reference | 0.98638 | 0.639 |
47DAP/reference | 1.00422 | 1 |
52DAP/reference | 0.9783 | 0.718 |
57DAP/reference | 0.9519 | 0.339 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.02669 | 0.966 |
26DAP/20DAP | 0.97492 | 1 |
34DAP/26DAP | 1.05384 | 1 |
51DAP/34DAP | 0.94487 | 0.587 |
52DAP/51DAP | 1.02089 | 0.848 |
53DAP/52DAP | 1.08443 | 0.565 |
55DAP/53DAP | 1.06345 | 0.719 |
57DAP/55DAP | 1.30414 | 0.626 |
62DAP/57DAP | 0.96751 | 0.994 |
68DAP/62DAP | 1.07888 | 0.944 |
68DAP/14DAP | 1.30367 | 0.211 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.99508 | 0.814 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.8748 | 0.371 |
Mature Green Tomato/Ripe Tomato | 0.86597 | 0.256 |
Immature Eggplant/Mature Eggplant | 1.28173 | 0.15 |
Ripe Pepper/Ripe Tomato | 0.88564 | 1 |
Mature Eggplant/Ripe Tomato | 0.80859 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95116 | 0.944 |
1-1-2/M82 | 1.01196 | 1 |
12-2/M82 | 0.94129 | 0.955 |
12-4/M82 | 0.98482 | 1 |
1-3/M82 | 0.93624 | 0.441 |
2-1-1/M82 | 0.84253 | 0.465 |
2-1/M82 | 1.15803 | 1 |
2-6/M82 | 0.95547 | 1 |
3-2/M82 | 0.99683 | 1 |
4-1-1/M82 | 0.99726 | 1 |
4-1/M82 | 1.18936 | 1 |
4-3-2/M82 | 0.86108 | 0.487 |
4-3/M82 | 0.96486 | 1 |
5-3/M82 | 0.98089 | 1 |
6-2/M82 | 0.9983 | 1 |
6-3/M82 | 1.02002 | 1 |
7-1/M82 | 0.95785 | 0.803 |
7-2/M82 | 0.88718 | 0.796 |
9-3-2/M82 | 0.92116 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.90458 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.1969 | 0.362 |
IL12-4/WTpooled | 1.0567 | 0.595 |
IL1-4/WTpooled | 1.11522 | |
WT/WTpooled | 0.92411 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.99643 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.9591 | 1 |
DC3000/delta hrp 6h | 1.10722 | 0.95 |
DC3000/delta hrp 12h | 1.07669 | 1 |
DC3000/delta hrp 24h | 1.04451 | 0.411 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.17817 | 0.042 |
DC3000 delta B/DC3000 delta AB | 1.07208 | 0.423 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.11019 | 1 |
Exp 36h | 1.0621 | 1 |
Exp 60h | 1.0638 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97831 | 1 |
Var 0h | 1.03964 | 0.936 |
Var 12h I row2-row1 | 1.20941 | 0.196 |
Var 12h NI row2-row1 | 0.98529 | 0.82 |
Var 36h I row2-row1 | 1.09108 | 1 |
Var 36h NI row2-row1 | 0.82512 | 0.478 |
Var 60h I row2-row1 | 1.07016 | 1 |
Var 60h NI row2-row1 | 1.09894 | 1 |
Time course 0hI-0hNI | 1.00825 | 1 |
Time course 12hI-12hNI | 1.0481 | 0.724 |
Time course 36hI-36hNI | 1.04248 | 0.881 |
Time course 60hI-60hNI | 1.89082 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.91768 | 0.362 |
transgenic ySAMdc/azygous control (breaker) | 1.09039 | 1 |
transgenic ySAMdc/azygous control (red) | 1.1141 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.99958 | 0.967 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.81287 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.94782 | 1 |
Manapal/WT (break) | 0.77846 | 0.333 |
Manapal/WT (red) | 0.83507 | 0.181 |
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