Expression of 1-1-7.2.13.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.215120.414
27DAP/17DAP1.133970.883
39DAP/27DAP0.794950.397
41DAP/39DAP1.771840.54
42DAP/41DAP0.997641
43DAP/42DAP1.057891
47DAP/43DAP1.188720.668
52DAP/47DAP0.960860.818
57DAP/52DAP1.033681

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.963240.442
17DAP/reference1.141960.161
27DAP/reference0.988740.741
39DAP/reference0.978760.734
41DAP/reference1.022760.963
42DAP/reference0.827710.008
43DAP/reference0.958140.555
47DAP/reference0.909450.035
52DAP/reference0.845820.086
57DAP/reference0.961040.415

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.965790.629
27DAP/17DAP1.060540.9
39DAP/27DAP1.127610.478
41DAP/39DAP1.102560.849
42DAP/41DAP0.856580.213
43DAP/42DAP1.165220.382
47DAP/43DAP1.056710.724
52DAP/47DAP1.068320.724
57DAP/52DAP1.081930.732
57DAP/7DAP1.363041

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910790.138
17DAP/reference0.905960.031
27DAP/reference0.844930.042
39DAP/reference1.045561
41DAP/reference0.998370.778
42DAP/reference0.959660.32
43DAP/reference0.93190.139
47DAP/reference0.856610.079
52DAP/reference0.78650.012
57DAP/reference0.906020.027

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.896260.164
17DAP/reference0.84820.189
27DAP/reference0.820580.111
39DAP/reference0.874750.091
41DAP/reference0.848560.16
42DAP/reference0.907150.189
43DAP/reference0.844120.201
47DAP/reference0.873570.064
52DAP/reference0.850530.086
57DAP/reference0.887240.107

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.882730.112
17DAP/reference1.014070.839
27DAP/reference0.92380.184
39DAP/reference0.862390.031
41DAP/reference0.870330.035
42DAP/reference0.805390.041
43DAP/reference0.930240.305
47DAP/reference0.839030.224
52DAP/reference0.756530.186
57DAP/reference0.844110.018

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.046031
26DAP/20DAP1.49004
34DAP/26DAP1.025911
51DAP/34DAP1.267540.535
52DAP/51DAP0.765911
53DAP/52DAP0.927760.677
55DAP/53DAP1.03191
57DAP/55DAP1.010220.955
62DAP/57DAP1.092591
68DAP/62DAP1.315540.936
68DAP/14DAPN/AN/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.983440.607

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.21439
Mature Green Tomato/Ripe Tomato0.499580.014
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.385091
Mature Eggplant/Ripe Tomato0.219641

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M821.20095
12-2/M82N/AN/A
12-4/M820.863910.33
1-3/M820.948261
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.22112
3-2/M821.09381
4-1-1/M821.3983
4-1/M82N/AN/A
4-3-2/M820.846230.487
4-3/M821.100471
5-3/M821.066360.467
6-2/M821.23162
6-3/M821.161761
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M821.39959

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.22410.365
IL2-6/WTpooled1.102860.531
IL7-5/WTpooled1.143650.792
IL7-3/WTpooled1.078931
IL12-4/WTpooled1.14720.538
IL1-4/WTpooled1.089251
WT/WTpooled0.989511

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.182050.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.052361
DC3000/delta hrp 6h0.830940.95
DC3000/delta hrp 12h0.998251
DC3000/delta hrp 24h1.095550.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB6.16456

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.075491
Exp 36h1.946180.326
Exp 60h1.815870.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.060881
Var 0h0.808440.933
Var 12h I row2-row11.150970.235
Var 12h NI row2-row11.06861
Var 36h I row2-row10.985331
Var 36h NI row2-row10.905550.706
Var 60h I row2-row10.925160.952
Var 60h NI row2-row10.932190.977
Time course 0hI-0hNI0.861950.149
Time course 12hI-12hNI1.63580.018
Time course 36hI-36hNI2.246550.006
Time course 60hI-60hNI5.35130.009

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.987020.862
transgenic ySAMdc/azygous control (breaker)0.584960.119
transgenic ySAMdc/azygous control (red)0.906371

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.970730.107

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.684460.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.751161
Manapal/WT (break)1.046991
Manapal/WT (red)0.995970.863