Expression of 1-1-7.2.13.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.21512 | 0.414 |
27DAP/17DAP | 1.13397 | 0.883 |
39DAP/27DAP | 0.79495 | 0.397 |
41DAP/39DAP | 1.77184 | 0.54 |
42DAP/41DAP | 0.99764 | 1 |
43DAP/42DAP | 1.05789 | 1 |
47DAP/43DAP | 1.18872 | 0.668 |
52DAP/47DAP | 0.96086 | 0.818 |
57DAP/52DAP | 1.03368 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96324 | 0.442 |
17DAP/reference | 1.14196 | 0.161 |
27DAP/reference | 0.98874 | 0.741 |
39DAP/reference | 0.97876 | 0.734 |
41DAP/reference | 1.02276 | 0.963 |
42DAP/reference | 0.82771 | 0.008 |
43DAP/reference | 0.95814 | 0.555 |
47DAP/reference | 0.90945 | 0.035 |
52DAP/reference | 0.84582 | 0.086 |
57DAP/reference | 0.96104 | 0.415 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.96579 | 0.629 |
27DAP/17DAP | 1.06054 | 0.9 |
39DAP/27DAP | 1.12761 | 0.478 |
41DAP/39DAP | 1.10256 | 0.849 |
42DAP/41DAP | 0.85658 | 0.213 |
43DAP/42DAP | 1.16522 | 0.382 |
47DAP/43DAP | 1.05671 | 0.724 |
52DAP/47DAP | 1.06832 | 0.724 |
57DAP/52DAP | 1.08193 | 0.732 |
57DAP/7DAP | 1.36304 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91079 | 0.138 |
17DAP/reference | 0.90596 | 0.031 |
27DAP/reference | 0.84493 | 0.042 |
39DAP/reference | 1.04556 | 1 |
41DAP/reference | 0.99837 | 0.778 |
42DAP/reference | 0.95966 | 0.32 |
43DAP/reference | 0.9319 | 0.139 |
47DAP/reference | 0.85661 | 0.079 |
52DAP/reference | 0.7865 | 0.012 |
57DAP/reference | 0.90602 | 0.027 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89626 | 0.164 |
17DAP/reference | 0.8482 | 0.189 |
27DAP/reference | 0.82058 | 0.111 |
39DAP/reference | 0.87475 | 0.091 |
41DAP/reference | 0.84856 | 0.16 |
42DAP/reference | 0.90715 | 0.189 |
43DAP/reference | 0.84412 | 0.201 |
47DAP/reference | 0.87357 | 0.064 |
52DAP/reference | 0.85053 | 0.086 |
57DAP/reference | 0.88724 | 0.107 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.88273 | 0.112 |
17DAP/reference | 1.01407 | 0.839 |
27DAP/reference | 0.9238 | 0.184 |
39DAP/reference | 0.86239 | 0.031 |
41DAP/reference | 0.87033 | 0.035 |
42DAP/reference | 0.80539 | 0.041 |
43DAP/reference | 0.93024 | 0.305 |
47DAP/reference | 0.83903 | 0.224 |
52DAP/reference | 0.75653 | 0.186 |
57DAP/reference | 0.84411 | 0.018 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.04603 | 1 |
26DAP/20DAP | 1.49004 | |
34DAP/26DAP | 1.02591 | 1 |
51DAP/34DAP | 1.26754 | 0.535 |
52DAP/51DAP | 0.76591 | 1 |
53DAP/52DAP | 0.92776 | 0.677 |
55DAP/53DAP | 1.0319 | 1 |
57DAP/55DAP | 1.01022 | 0.955 |
62DAP/57DAP | 1.09259 | 1 |
68DAP/62DAP | 1.31554 | 0.936 |
68DAP/14DAP | N/A | N/A |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.98344 | 0.607 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.21439 | |
Mature Green Tomato/Ripe Tomato | 0.49958 | 0.014 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 1.38509 | 1 |
Mature Eggplant/Ripe Tomato | 0.21964 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 1.20095 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.86391 | 0.33 |
1-3/M82 | 0.94826 | 1 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.22112 | |
3-2/M82 | 1.09381 | |
4-1-1/M82 | 1.3983 | |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 0.84623 | 0.487 |
4-3/M82 | 1.10047 | 1 |
5-3/M82 | 1.06636 | 0.467 |
6-2/M82 | 1.23162 | |
6-3/M82 | 1.16176 | 1 |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | 1.39959 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 1.2241 | 0.365 |
IL2-6/WTpooled | 1.10286 | 0.531 |
IL7-5/WTpooled | 1.14365 | 0.792 |
IL7-3/WTpooled | 1.07893 | 1 |
IL12-4/WTpooled | 1.1472 | 0.538 |
IL1-4/WTpooled | 1.08925 | 1 |
WT/WTpooled | 0.98951 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.18205 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.05236 | 1 |
DC3000/delta hrp 6h | 0.83094 | 0.95 |
DC3000/delta hrp 12h | 0.99825 | 1 |
DC3000/delta hrp 24h | 1.09555 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 6.16456 | |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.07549 | 1 |
Exp 36h | 1.94618 | 0.326 |
Exp 60h | 1.81587 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06088 | 1 |
Var 0h | 0.80844 | 0.933 |
Var 12h I row2-row1 | 1.15097 | 0.235 |
Var 12h NI row2-row1 | 1.0686 | 1 |
Var 36h I row2-row1 | 0.98533 | 1 |
Var 36h NI row2-row1 | 0.90555 | 0.706 |
Var 60h I row2-row1 | 0.92516 | 0.952 |
Var 60h NI row2-row1 | 0.93219 | 0.977 |
Time course 0hI-0hNI | 0.86195 | 0.149 |
Time course 12hI-12hNI | 1.6358 | 0.018 |
Time course 36hI-36hNI | 2.24655 | 0.006 |
Time course 60hI-60hNI | 5.3513 | 0.009 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98702 | 0.862 |
transgenic ySAMdc/azygous control (breaker) | 0.58496 | 0.119 |
transgenic ySAMdc/azygous control (red) | 0.90637 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.97073 | 0.107 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.68446 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.75116 | 1 |
Manapal/WT (break) | 1.04699 | 1 |
Manapal/WT (red) | 0.99597 | 0.863 |
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