Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.2.14.13

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.3922	0.561
27DAP/17DAP	0.98683	1
39DAP/27DAP	1.34145	0.369
41DAP/39DAP	1.95909	0.701
42DAP/41DAP	0.87119	1
43DAP/42DAP	1.01601	0.937
47DAP/43DAP	1.27404	0.349
52DAP/47DAP	0.92811	0.754
57DAP/52DAP	1.12038	0.935

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	N/A	N/A
17DAP/reference	N/A	N/A
27DAP/reference	0.50528
39DAP/reference	0.66874	0.029
41DAP/reference	1.45719	0.093
42DAP/reference	1.30402	0.001
43DAP/reference	0.73427
47DAP/reference	0.93438	0.366
52DAP/reference	N/A	N/A
57DAP/reference	N/A	N/A

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.98412	0.716
27DAP/17DAP	1.02459	0.969
39DAP/27DAP	1.27134	0.453
41DAP/39DAP	1.09174	0.883
42DAP/41DAP	1.29146	0.425
43DAP/42DAP	1.12215	0.413
47DAP/43DAP	1.42031	0.744
52DAP/47DAP	0.77592	0.194
57DAP/52DAP	0.98019	0.721
57DAP/7DAP	1.38977

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.84901	0.074
17DAP/reference	0.86887	0.011
27DAP/reference	0.83022	0.01
39DAP/reference	0.93375	0.039
41DAP/reference	0.87134	0.012
42DAP/reference	0.9229	0.095
43DAP/reference	0.90109	0.021
47DAP/reference	0.8702	0.222
52DAP/reference	0.89453	0.053
57DAP/reference	0.83259	0.011

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.08304
17DAP/reference	1.53079	0.101
27DAP/reference	0.35228
39DAP/reference	1.04552
41DAP/reference	0.96236
42DAP/reference	N/A	N/A
43DAP/reference	0.825	0.37
47DAP/reference	1.32894
52DAP/reference	1.15882	0.065
57DAP/reference	1.53017	0.112

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.84242	0.042
17DAP/reference	0.92558	0.358
27DAP/reference	0.8768	0.032
39DAP/reference	0.87386	0.031
41DAP/reference	0.87839	0.019
42DAP/reference	0.83936	0.018
43DAP/reference	0.87072	0.018
47DAP/reference	N/A	N/A
52DAP/reference	1.15124	0.862
57DAP/reference	1.47353	0.625

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.98055	1
26DAP/20DAP	0.34473
34DAP/26DAP	0.64503
51DAP/34DAP	0.21941
52DAP/51DAP	0.52829	0.151
53DAP/52DAP	0.93411	0.891
55DAP/53DAP	1.58577	0.666
57DAP/55DAP	1.1045
62DAP/57DAP	0.6348	0.016
68DAP/62DAP	0.77005	0.668
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	1.40659	0.814

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	0.31746
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	N/A	N/A
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	1.25748	1
IL12-4/WTpooled	1.03078	0.891
IL1-4/WTpooled	1.40555	1
WT/WTpooled	1.0017	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.04676	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.04289
Var 0h	1.04638	0.421
Var 12h I row2-row1	1.02447	1
Var 12h NI row2-row1	1.14709
Var 36h I row2-row1	2.09431	0.41
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	0.95581	1
Var 60h NI row2-row1	1.18933	1
Time course 0hI-0hNI	1.07021	1
Time course 12hI-12hNI	0.75434
Time course 36hI-36hNI	1.27902	0.316
Time course 60hI-60hNI	0.43559	0.047

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.10639	1
Manapal/WT (red)	N/A	N/A