Expression of 1-1-7.2.14.15

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.037730.878
27DAP/17DAP0.965750.967
39DAP/27DAP1.057370.985
41DAP/39DAP1.205770.323
42DAP/41DAP1.203420.873
43DAP/42DAP0.970620.91
47DAP/43DAP1.029160.999
52DAP/47DAP1.068190.982
57DAP/52DAP1.062970.92

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.971550.489
17DAP/reference0.976720.536
27DAP/reference1.002881
39DAP/reference1.036730.603
41DAP/reference1.083360.393
42DAP/reference0.935440.041
43DAP/reference0.983930.728
47DAP/reference0.995010.602
52DAP/reference0.926070.21
57DAP/reference0.981110.553

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.920070.211
27DAP/17DAP1.043880.9
39DAP/27DAP0.976340.795
41DAP/39DAP1.066950.65
42DAP/41DAP0.999320.926
43DAP/42DAP1.050730.23
47DAP/43DAP1.024790.865
52DAP/47DAP0.998710.982
57DAP/52DAP0.953920.56
57DAP/7DAP1.049711

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference2.197990.024
17DAP/reference2.529180.006
27DAP/reference2.610120.006
39DAP/reference3.328460.005
41DAP/reference3.551930.011
42DAP/reference4.371060.006
43DAP/reference3.800750.007
47DAP/reference2.129250.205
52DAP/reference3.386580.007
57DAP/reference3.447470.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.111020.355
17DAP/reference0.95460.176
27DAP/reference0.935820.144
39DAP/reference0.978760.497
41DAP/reference0.901680.087
42DAP/reference0.912230.037
43DAP/reference0.936530.414
47DAP/reference0.919960.015
52DAP/reference1.028160.393
57DAP/reference1.0030.916

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.990590.03
17DAP/reference1.416450.371
27DAP/reference2.11790.02
39DAP/reference1.995940.01
41DAP/reference2.061950.016
42DAP/reference2.000470.039
43DAP/reference2.017940.05
47DAP/reference0.938990.109
52DAP/reference2.638510.052
57DAP/reference1.470791

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.974181
26DAP/20DAP1.02341
34DAP/26DAP1.041971
51DAP/34DAP0.996890.937
52DAP/51DAP0.950440.151
53DAP/52DAP1.020630.921
55DAP/53DAP0.980210.82
57DAP/55DAP0.980390.909
62DAP/57DAP1.050390.8
68DAP/62DAP0.982090.81
68DAP/14DAP1.245030.453

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.99040.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.475640.058
Mature Green Tomato/Ripe Tomato1.14141
Immature Eggplant/Mature Eggplant0.443410.074
Ripe Pepper/Ripe Tomato1.023141
Mature Eggplant/Ripe Tomato4.659750.26

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.985081
1-1-2/M821.011311
12-2/M820.882820.692
12-4/M820.956531
1-3/M820.809740.441
2-1-1/M821.116220.375
2-1/M821.308981
2-6/M821.079041
3-2/M821.007150.426
4-1-1/M821.087031
4-1/M821.039251
4-3-2/M821.05871
4-3/M821.031191
5-3/M820.999371
6-2/M821.0720.235
6-3/M820.983711
7-1/M821.053431
7-2/M821.068881
9-3-2/M820.98493

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.02341
IL7-5/WTpooled0.88945
IL7-3/WTpooled1.140341
IL12-4/WTpooled1.051090.646
IL1-4/WTpooled1.185591
WT/WTpooled0.99161

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.957571

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.969221
DC3000/delta hrp 6h1.008050.95
DC3000/delta hrp 12h0.975111
DC3000/delta hrp 24h0.992281

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.208220.063
DC3000 delta B/DC3000 delta AB1.18660.177

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.839751
Exp 36h1.04761
Exp 60h0.758350.386

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.035621
Var 0h0.794841
Var 12h I row2-row11.642690.58
Var 12h NI row2-row11.000021
Var 36h I row2-row11.008191
Var 36h NI row2-row10.902930.229
Var 60h I row2-row11.085261
Var 60h NI row2-row11.060690.904
Time course 0hI-0hNI1.042820.852
Time course 12hI-12hNI1.108890.097
Time course 36hI-36hNI1.140230.039
Time course 60hI-60hNI1.417720.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.244290.218
transgenic ySAMdc/azygous control (breaker)1.304041
transgenic ySAMdc/azygous control (red)1.147980.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.967450.136

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.492430.237

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.123791
Manapal/WT (break)1.158841
Manapal/WT (red)1.078021