Expression of 1-1-7.2.14.15
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.03773 | 0.878 |
27DAP/17DAP | 0.96575 | 0.967 |
39DAP/27DAP | 1.05737 | 0.985 |
41DAP/39DAP | 1.20577 | 0.323 |
42DAP/41DAP | 1.20342 | 0.873 |
43DAP/42DAP | 0.97062 | 0.91 |
47DAP/43DAP | 1.02916 | 0.999 |
52DAP/47DAP | 1.06819 | 0.982 |
57DAP/52DAP | 1.06297 | 0.92 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.97155 | 0.489 |
17DAP/reference | 0.97672 | 0.536 |
27DAP/reference | 1.00288 | 1 |
39DAP/reference | 1.03673 | 0.603 |
41DAP/reference | 1.08336 | 0.393 |
42DAP/reference | 0.93544 | 0.041 |
43DAP/reference | 0.98393 | 0.728 |
47DAP/reference | 0.99501 | 0.602 |
52DAP/reference | 0.92607 | 0.21 |
57DAP/reference | 0.98111 | 0.553 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92007 | 0.211 |
27DAP/17DAP | 1.04388 | 0.9 |
39DAP/27DAP | 0.97634 | 0.795 |
41DAP/39DAP | 1.06695 | 0.65 |
42DAP/41DAP | 0.99932 | 0.926 |
43DAP/42DAP | 1.05073 | 0.23 |
47DAP/43DAP | 1.02479 | 0.865 |
52DAP/47DAP | 0.99871 | 0.982 |
57DAP/52DAP | 0.95392 | 0.56 |
57DAP/7DAP | 1.04971 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 2.19799 | 0.024 |
17DAP/reference | 2.52918 | 0.006 |
27DAP/reference | 2.61012 | 0.006 |
39DAP/reference | 3.32846 | 0.005 |
41DAP/reference | 3.55193 | 0.011 |
42DAP/reference | 4.37106 | 0.006 |
43DAP/reference | 3.80075 | 0.007 |
47DAP/reference | 2.12925 | 0.205 |
52DAP/reference | 3.38658 | 0.007 |
57DAP/reference | 3.44747 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.11102 | 0.355 |
17DAP/reference | 0.9546 | 0.176 |
27DAP/reference | 0.93582 | 0.144 |
39DAP/reference | 0.97876 | 0.497 |
41DAP/reference | 0.90168 | 0.087 |
42DAP/reference | 0.91223 | 0.037 |
43DAP/reference | 0.93653 | 0.414 |
47DAP/reference | 0.91996 | 0.015 |
52DAP/reference | 1.02816 | 0.393 |
57DAP/reference | 1.003 | 0.916 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.99059 | 0.03 |
17DAP/reference | 1.41645 | 0.371 |
27DAP/reference | 2.1179 | 0.02 |
39DAP/reference | 1.99594 | 0.01 |
41DAP/reference | 2.06195 | 0.016 |
42DAP/reference | 2.00047 | 0.039 |
43DAP/reference | 2.01794 | 0.05 |
47DAP/reference | 0.93899 | 0.109 |
52DAP/reference | 2.63851 | 0.052 |
57DAP/reference | 1.47079 | 1 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.97418 | 1 |
26DAP/20DAP | 1.0234 | 1 |
34DAP/26DAP | 1.04197 | 1 |
51DAP/34DAP | 0.99689 | 0.937 |
52DAP/51DAP | 0.95044 | 0.151 |
53DAP/52DAP | 1.02063 | 0.921 |
55DAP/53DAP | 0.98021 | 0.82 |
57DAP/55DAP | 0.98039 | 0.909 |
62DAP/57DAP | 1.05039 | 0.8 |
68DAP/62DAP | 0.98209 | 0.81 |
68DAP/14DAP | 1.24503 | 0.453 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.9904 | 0.696 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.47564 | 0.058 |
Mature Green Tomato/Ripe Tomato | 1.1414 | 1 |
Immature Eggplant/Mature Eggplant | 0.44341 | 0.074 |
Ripe Pepper/Ripe Tomato | 1.02314 | 1 |
Mature Eggplant/Ripe Tomato | 4.65975 | 0.26 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.98508 | 1 |
1-1-2/M82 | 1.01131 | 1 |
12-2/M82 | 0.88282 | 0.692 |
12-4/M82 | 0.95653 | 1 |
1-3/M82 | 0.80974 | 0.441 |
2-1-1/M82 | 1.11622 | 0.375 |
2-1/M82 | 1.30898 | 1 |
2-6/M82 | 1.07904 | 1 |
3-2/M82 | 1.00715 | 0.426 |
4-1-1/M82 | 1.08703 | 1 |
4-1/M82 | 1.03925 | 1 |
4-3-2/M82 | 1.0587 | 1 |
4-3/M82 | 1.03119 | 1 |
5-3/M82 | 0.99937 | 1 |
6-2/M82 | 1.072 | 0.235 |
6-3/M82 | 0.98371 | 1 |
7-1/M82 | 1.05343 | 1 |
7-2/M82 | 1.06888 | 1 |
9-3-2/M82 | 0.98493 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.0234 | 1 |
IL7-5/WTpooled | 0.88945 | |
IL7-3/WTpooled | 1.14034 | 1 |
IL12-4/WTpooled | 1.05109 | 0.646 |
IL1-4/WTpooled | 1.18559 | 1 |
WT/WTpooled | 0.9916 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.95757 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.96922 | 1 |
DC3000/delta hrp 6h | 1.00805 | 0.95 |
DC3000/delta hrp 12h | 0.97511 | 1 |
DC3000/delta hrp 24h | 0.99228 | 1 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.20822 | 0.063 |
DC3000 delta B/DC3000 delta AB | 1.1866 | 0.177 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.83975 | 1 |
Exp 36h | 1.0476 | 1 |
Exp 60h | 0.75835 | 0.386 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03562 | 1 |
Var 0h | 0.79484 | 1 |
Var 12h I row2-row1 | 1.64269 | 0.58 |
Var 12h NI row2-row1 | 1.00002 | 1 |
Var 36h I row2-row1 | 1.00819 | 1 |
Var 36h NI row2-row1 | 0.90293 | 0.229 |
Var 60h I row2-row1 | 1.08526 | 1 |
Var 60h NI row2-row1 | 1.06069 | 0.904 |
Time course 0hI-0hNI | 1.04282 | 0.852 |
Time course 12hI-12hNI | 1.10889 | 0.097 |
Time course 36hI-36hNI | 1.14023 | 0.039 |
Time course 60hI-60hNI | 1.41772 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.24429 | 0.218 |
transgenic ySAMdc/azygous control (breaker) | 1.30404 | 1 |
transgenic ySAMdc/azygous control (red) | 1.14798 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96745 | 0.136 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.49243 | 0.237 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.12379 | 1 |
Manapal/WT (break) | 1.15884 | 1 |
Manapal/WT (red) | 1.07802 | 1 |
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