Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.2.14.18

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	1.1022	0.839
27DAP/17DAP	0.80182	0.694
39DAP/27DAP	1.70674	0.658
41DAP/39DAP	1.12801	0.887
42DAP/41DAP	1.10438	1
43DAP/42DAP	2.21791	0.118
47DAP/43DAP	1.29368	0.618
52DAP/47DAP	1.052	0.886
57DAP/52DAP	1.39258	0.977

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.7602	0.045
17DAP/reference	1.27799	0.412
27DAP/reference	0.87077	0.012
39DAP/reference	0.42038	0.124
41DAP/reference	1.13127	0.393
42DAP/reference	1.49059	0.001
43DAP/reference	N/A	N/A
47DAP/reference	1.0344	1
52DAP/reference	0.74762
57DAP/reference	0.3605	0.118

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.7832	0.178
27DAP/17DAP	0.95934	0.887
39DAP/27DAP	1.34963	0.603
41DAP/39DAP	1.29736
42DAP/41DAP	1.99848	0.004
43DAP/42DAP	1.66404	0.038
47DAP/43DAP	0.68594
52DAP/47DAP	0.74986
57DAP/52DAP	0.98343	0.857
57DAP/7DAP	1.80545	0.249

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.16421	0.154
17DAP/reference	1.04562	0.162
27DAP/reference	1.39464	0.02
39DAP/reference	1.82406	0.007
41DAP/reference	2.13513	0.009
42DAP/reference	2.92937	0.006
43DAP/reference	3.4725	0.006
47DAP/reference	2.70343	0.036
52DAP/reference	2.43995	0.007
57DAP/reference	2.13184	0.004

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.9166	0.564
17DAP/reference	N/A	N/A
27DAP/reference	1.24349	0.208
39DAP/reference	0.79305	0.013
41DAP/reference	N/A	N/A
42DAP/reference	0.45653
43DAP/reference	0.96775	0.539
47DAP/reference	1.38191	0.026
52DAP/reference	1.11363
57DAP/reference	1.12098

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	0.89051	0.311
17DAP/reference	0.84591	0.281
27DAP/reference	1.05894	0.51
39DAP/reference	1.93425	0.006
41DAP/reference	1.20644	0.048
42DAP/reference	1.37803	0.057
43DAP/reference	0.94494	0.503
47DAP/reference	0.66994	0.006
52DAP/reference	1.38763	0.318
57DAP/reference	1.03569

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.95001	1
26DAP/20DAP	N/A	N/A
34DAP/26DAP	N/A	N/A
51DAP/34DAP	1.23223	0.967
52DAP/51DAP	2.38421
53DAP/52DAP	0.897	0.75
55DAP/53DAP	1.08695	0.696
57DAP/55DAP	2.48068
62DAP/57DAP	0.98417	1
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.97517	0.665

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	0.68726	0.243
IL2-6/WTpooled	0.96875	1
IL7-5/WTpooled	1.27582	0.792
IL7-3/WTpooled	1.50471	1
IL12-4/WTpooled	1.23276	0.673
IL1-4/WTpooled	1.06395	1
WT/WTpooled	1.04735	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	N/A	N/A
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	1.07289	1
Var 0h	0.50118	1
Var 12h I row2-row1	1.0352
Var 12h NI row2-row1	0.95342	0.906
Var 36h I row2-row1	0.93385	1
Var 36h NI row2-row1	1.05903	0.276
Var 60h I row2-row1	1.04266	1
Var 60h NI row2-row1	0.89328
Time course 0hI-0hNI	0.85091	0.138
Time course 12hI-12hNI	0.9243	0.287
Time course 36hI-36hNI	1.01859
Time course 60hI-60hNI	0.67196	0.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	N/A	N/A
Manapal/WT (red)	1.27411	0.15