Expression of 1-1-7.2.14.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.000770.847
27DAP/17DAP1.278520.869
39DAP/27DAP1.059111
41DAP/39DAP1.062990.868
42DAP/41DAP1.545830.841
43DAP/42DAP0.829530.776
47DAP/43DAP1.246420.909
52DAP/47DAP2.247390.46
57DAP/52DAP0.994750.976

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.714130.007
17DAP/reference1.395990.239
27DAP/reference1.726870.15
39DAP/reference1.096580.991
41DAP/reference1.765170.014
42DAP/reference1.202440.048
43DAP/referenceN/AN/A
47DAP/reference1.174020.13
52DAP/reference3.42671
57DAP/reference0.469130.118

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.128770.826
27DAP/17DAP0.807420.418
39DAP/27DAP1.090140.824
41DAP/39DAP1.383160.753
42DAP/41DAP1.31954
43DAP/42DAP0.80520.165
47DAP/43DAP1.119230.853
52DAP/47DAP1.163120.779
57DAP/52DAP0.591980.225
57DAP/7DAP0.20468

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.93610.402
17DAP/reference1.298620.049
27DAP/reference1.189320.023
39DAP/reference1.276630.314
41DAP/reference1.50570.016
42DAP/reference1.317950.016
43DAP/reference1.350960.045
47DAP/reference1.059820.915
52DAP/reference1.138760.159
57DAP/reference1.168280.232

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.204890.16
17DAP/reference1.654250.022
27DAP/reference1.323010.535
39DAP/reference1.40457
41DAP/reference1.794190.009
42DAP/reference3.06611
43DAP/reference1.408540.473
47DAP/reference1.581570.008
52DAP/referenceN/AN/A
57DAP/reference1.19861

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.057520.518
17DAP/reference1.10420.511
27DAP/reference1.246030.092
39DAP/reference1.174060.059
41DAP/reference1.009251
42DAP/reference1.14410.146
43DAP/reference1.228150.194
47DAP/reference0.496310.005
52DAP/reference1.011971
57DAP/reference1.378910.063

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.371540.966
26DAP/20DAP3.78366
34DAP/26DAP1.483190.819
51DAP/34DAP0.86280.64
52DAP/51DAP0.31257
53DAP/52DAP0.985730.891
55DAP/53DAP1.820290.925
57DAP/55DAP0.921950.765
62DAP/57DAP1.011161
68DAP/62DAP2.076830.06
68DAP/14DAP1.30493

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.672980.954

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe TomatoN/AN/A

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M82N/AN/A
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M82N/AN/A
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.094930.277
IL2-6/WTpooled1.105060.659
IL7-5/WTpooled0.807111
IL7-3/WTpooled1.229321
IL12-4/WTpooled0.987451
IL1-4/WTpooled1.010261
WT/WTpooled0.90681

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculationN/AN/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0hN/AN/A
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.101961
DC3000/delta hrp 24hN/AN/A

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h1.05820.263
Var 12h I row2-row10.35979
Var 12h NI row2-row10.3594
Var 36h I row2-row11.55983
Var 36h NI row2-row12.460511
Var 60h I row2-row11.016660.952
Var 60h NI row2-row13.69892
Time course 0hI-0hNI0.849940.821
Time course 12hI-12hNIN/AN/A
Time course 36hI-36hNI1.03622
Time course 60hI-60hNI0.26424

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)N/AN/A

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no saltN/AN/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)2.251140.14
Manapal/WT (red)1.049820.413