Tomato Functional Genomics Database (TFGD)

Expression of 1-1-7.2.14.9

Experiment: Wild type tomato fruit development (set 1)

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	2.47116	0.098
27DAP/17DAP	0.70395	0.35
39DAP/27DAP	1.91788	0.59
41DAP/39DAP	0.65177	0.15
42DAP/41DAP	0.7922	1
43DAP/42DAP	1.43462	0.236
47DAP/43DAP	1.76637	0.702
52DAP/47DAP	0.85705	0.633
57DAP/52DAP	4.45031	0.952

Experiment: Wild type tomato fruit development (set 2)

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.14467
17DAP/reference	N/A	N/A
27DAP/reference	N/A	N/A
39DAP/reference	0.76389
41DAP/reference	1.29434	0.145
42DAP/reference	1.09453	0.544
43DAP/reference	N/A	N/A
47DAP/reference	1.15884	0.11
52DAP/reference	N/A	N/A
57DAP/reference	1.14978	0.802

Experiment: tomato Never-ripe mutant fruit development

hybridization	ratio	FDR (corrected p value)
17DAP/7DAP	0.91255	0.542
27DAP/17DAP	1.04892	0.96
39DAP/27DAP	1.59581	0.067
41DAP/39DAP	0.72384	0.567
42DAP/41DAP	0.94449	0.721
43DAP/42DAP	1.13422	1
47DAP/43DAP	1.18705	0.897
52DAP/47DAP	0.9976	0.93
57DAP/52DAP	0.73756	0.424
57DAP/7DAP	3.03481

Experiment: tomato rin mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.09984	0.292
17DAP/reference	1.11288	0.026
27DAP/reference	1.04913	0.246
39DAP/reference	0.97292	0.17
41DAP/reference	1.00268	1
42DAP/reference	0.98653	0.482
43DAP/reference	0.8638	0.105
47DAP/reference	0.86811	0.504
52DAP/reference	0.77484	0.017
57DAP/reference	0.88466	0.123

Experiment: tomato nor mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.04533	1
17DAP/reference	3.04485	0.007
27DAP/reference	0.80585
39DAP/reference	1.04752	0.725
41DAP/reference	0.48028	0.005
42DAP/reference	N/A	N/A
43DAP/reference	N/A	N/A
47DAP/reference	N/A	N/A
52DAP/reference	1.31145	0.322
57DAP/reference	1.07828	0.754

Experiment: tomato hp1 mutant fruit development

hybridization	ratio	FDR (corrected p value)
7DAP/reference	1.07566	0.109
17DAP/reference	1.01595	0.775
27DAP/reference	0.9644	0.257
39DAP/reference	0.99354	0.693
41DAP/reference	0.95573	0.237
42DAP/reference	0.96207	0.287
43DAP/reference	1.01082	0.923
47DAP/reference	5.04979
52DAP/reference	0.85316	0.25
57DAP/reference	1.31978	0.706

Experiment: Wild type pepper fruit development

hybridization	ratio	FDR (corrected p value)
20DAP/14DAP	0.61764	0.101
26DAP/20DAP	N/A	N/A
34DAP/26DAP	0.62898	0.102
51DAP/34DAP	0.99987	0.957
52DAP/51DAP	0.82892	1
53DAP/52DAP	0.91269
55DAP/53DAP	1.3994	0.042
57DAP/55DAP	0.86255
62DAP/57DAP	5.14725
68DAP/62DAP	N/A	N/A
68DAP/14DAP	N/A	N/A

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)

hybridization	ratio	FDR (corrected p value)
Tomato Breaker/Pepper Breaker	0.76076	0.175

Experiment: Solanaceae fruit comparison

hybridization	ratio	FDR (corrected p value)
Green Pepper/Ripe Pepper	N/A	N/A
Mature Green Tomato/Ripe Tomato	N/A	N/A
Immature Eggplant/Mature Eggplant	N/A	N/A
Ripe Pepper/Ripe Tomato	N/A	N/A
Mature Eggplant/Ripe Tomato	N/A	N/A

Experiment: IL carotenoid

hybridization	ratio	FDR (corrected p value)
11-1/M82	N/A	N/A
1-1-2/M82	N/A	N/A
12-2/M82	N/A	N/A
12-4/M82	N/A	N/A
1-3/M82	N/A	N/A
2-1-1/M82	N/A	N/A
2-1/M82	N/A	N/A
2-6/M82	N/A	N/A
3-2/M82	N/A	N/A
4-1-1/M82	N/A	N/A
4-1/M82	N/A	N/A
4-3-2/M82	N/A	N/A
4-3/M82	N/A	N/A
5-3/M82	N/A	N/A
6-2/M82	N/A	N/A
6-3/M82	N/A	N/A
7-1/M82	N/A	N/A
7-2/M82	N/A	N/A
9-3-2/M82	N/A	N/A

Experiment: Tomato introgression line transcript analysis

hybridization	ratio	FDR (corrected p value)
IL4-4/WTpooled	N/A	N/A
IL2-6/WTpooled	1.16679	0.441
IL7-5/WTpooled	N/A	N/A
IL7-3/WTpooled	0.89277	0.418
IL12-4/WTpooled	0.82624	0.554
IL1-4/WTpooled	0.91824
WT/WTpooled	1.01569	1

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants

hybridization	ratio	FDR (corrected p value)
10 h post inoculation	N/A	N/A

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3

hybridization	ratio	FDR (corrected p value)
DC3000/delat hrp 0h	N/A	N/A
DC3000/delta hrp 6h	N/A	N/A
DC3000/delta hrp 12h	1.33974	1
DC3000/delta hrp 24h	N/A	N/A

Experiment: DC3000 effector mutants

hybridization	ratio	FDR (corrected p value)
DC3000 delta A/DC3000 delta AB	N/A	N/A
DC3000 delta B/DC3000 delta AB	N/A	N/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans

hybridization	ratio	FDR (corrected p value)
Exp 12h	N/A	N/A
Exp 36h	N/A	N/A
Exp 60h	N/A	N/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field

hybridization	ratio	FDR (corrected p value)
self-self	N/A	N/A
Var 0h	1.24826	0.421
Var 12h I row2-row1	N/A	N/A
Var 12h NI row2-row1	N/A	N/A
Var 36h I row2-row1	N/A	N/A
Var 36h NI row2-row1	N/A	N/A
Var 60h I row2-row1	N/A	N/A
Var 60h NI row2-row1	N/A	N/A
Time course 0hI-0hNI	N/A	N/A
Time course 12hI-12hNI	N/A	N/A
Time course 36hI-36hNI	N/A	N/A
Time course 60hI-60hNI	N/A	N/A

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls

hybridization	ratio	FDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)	N/A	N/A
transgenic ySAMdc/azygous control (breaker)	N/A	N/A
transgenic ySAMdc/azygous control (red)	N/A	N/A

Experiment: Tomato root culture and Al treatment

hybridization	ratio	FDR (corrected p value)
Al-treated/control	N/A	N/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings

hybridization	ratio	FDR (corrected p value)
salt-treated/no salt	N/A	N/A

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit

hybridization	ratio	FDR (corrected p value)
Manapal/WT (mature green)	N/A	N/A
Manapal/WT (break)	1.38517	0.183
Manapal/WT (red)	1.19926	1