Expression of 1-1-7.2.15.3
Experiment: Wild type tomato fruit development (set 1)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.17928 | 0.602 |
| 27DAP/17DAP | 0.85088 | 0.621 |
| 39DAP/27DAP | 1.26894 | 0.595 |
| 41DAP/39DAP | 0.88814 | 0.54 |
| 42DAP/41DAP | 1.272 | 0.841 |
| 43DAP/42DAP | 1.17384 | 1 |
| 47DAP/43DAP | 0.97226 | 0.821 |
| 52DAP/47DAP | 0.99074 | 0.873 |
| 57DAP/52DAP | 1.05086 | 1 |
Experiment: Wild type tomato fruit development (set 2)
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.943 | 0.402 |
| 17DAP/reference | 1.18082 | 0.412 |
| 27DAP/reference | 1.4081 | 0.014 |
| 39DAP/reference | 1.14609 | 0.403 |
| 41DAP/reference | 1.19586 | 0.133 |
| 42DAP/reference | 1.22521 | 0.043 |
| 43DAP/reference | 1.16652 | 0.011 |
| 47DAP/reference | 1.40024 | 0.001 |
| 52DAP/reference | 1.02857 | 1 |
| 57DAP/reference | 1.11171 | 0.173 |
Experiment: tomato Never-ripe mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 17DAP/7DAP | 1.31598 | 0.051 |
| 27DAP/17DAP | 0.95351 | 0.748 |
| 39DAP/27DAP | 1.3196 | 0.062 |
| 41DAP/39DAP | 0.82549 | 0.53 |
| 42DAP/41DAP | 0.89709 | 0.368 |
| 43DAP/42DAP | 1.06122 | 0.554 |
| 47DAP/43DAP | 1.0673 | 0.618 |
| 52DAP/47DAP | 1.06965 | 0.724 |
| 57DAP/52DAP | 0.78341 | 0.252 |
| 57DAP/7DAP | 0.98535 | 1 |
Experiment: tomato rin mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.25167 | 0.075 |
| 17DAP/reference | 1.31716 | 0.009 |
| 27DAP/reference | 1.3565 | 0.009 |
| 39DAP/reference | 1.57956 | 0.008 |
| 41DAP/reference | 1.69025 | 0.022 |
| 42DAP/reference | 1.55826 | 0.1 |
| 43DAP/reference | 1.66794 | 0.007 |
| 47DAP/reference | 1.47037 | 0.037 |
| 52DAP/reference | 1.59854 | 0.007 |
| 57DAP/reference | 1.58202 | 0.005 |
Experiment: tomato nor mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 0.78302 | 0.046 |
| 17DAP/reference | 0.91281 | 0.287 |
| 27DAP/reference | 0.91529 | 0.249 |
| 39DAP/reference | 1.34083 | 0.012 |
| 41DAP/reference | 1.059 | 0.846 |
| 42DAP/reference | 1.50874 | 0.013 |
| 43DAP/reference | 1.02737 | 0.657 |
| 47DAP/reference | 1.50402 | 0.008 |
| 52DAP/reference | 1.05348 | 0.559 |
| 57DAP/reference | 1.03238 | 0.789 |
Experiment: tomato hp1 mutant fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 7DAP/reference | 1.14504 | 0.202 |
| 17DAP/reference | 1.06573 | 0.482 |
| 27DAP/reference | 1.23398 | 0.1 |
| 39DAP/reference | 1.17426 | 0.024 |
| 41DAP/reference | 1.32828 | 0.018 |
| 42DAP/reference | 1.32772 | 0.012 |
| 43DAP/reference | 1.18826 | 0.459 |
| 47DAP/reference | 1.33124 | 0.031 |
| 52DAP/reference | 1.36918 | 0.063 |
| 57DAP/reference | 1.32695 | 0.2 |
Experiment: Wild type pepper fruit development
| hybridization | ratio | FDR (corrected p value) |
|---|
| 20DAP/14DAP | 0.91227 | 1 |
| 26DAP/20DAP | 0.68169 | 0.512 |
| 34DAP/26DAP | 0.92239 | 0.803 |
| 51DAP/34DAP | 1.03456 | 1 |
| 52DAP/51DAP | 0.92153 | 1 |
| 53DAP/52DAP | 1.17796 | 0.384 |
| 55DAP/53DAP | 0.98464 | 0.852 |
| 57DAP/55DAP | 1.03835 | 0.944 |
| 62DAP/57DAP | 1.12009 | 0.833 |
| 68DAP/62DAP | 0.95564 | 0.769 |
| 68DAP/14DAP | 1.2295 | 0.958 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
| hybridization | ratio | FDR (corrected p value) |
|---|
| Tomato Breaker/Pepper Breaker | 10.0359 | 0.014 |
Experiment: Solanaceae fruit comparison
| hybridization | ratio | FDR (corrected p value) |
|---|
| Green Pepper/Ripe Pepper | 1.13564 | 0.176 |
| Mature Green Tomato/Ripe Tomato | 1.08606 | 1 |
| Immature Eggplant/Mature Eggplant | 0.64967 | 0.07 |
| Ripe Pepper/Ripe Tomato | 0.10526 | 0.224 |
| Mature Eggplant/Ripe Tomato | 0.21741 | 0.234 |
Experiment: IL carotenoid
| hybridization | ratio | FDR (corrected p value) |
|---|
| 11-1/M82 | 0.77516 | 0.503 |
| 1-1-2/M82 | 1.07268 | 1 |
| 12-2/M82 | 0.90228 | 0.955 |
| 12-4/M82 | 1.11349 | 1 |
| 1-3/M82 | 1.78077 | 0.248 |
| 2-1-1/M82 | 0.9159 | 0.465 |
| 2-1/M82 | 1.00858 | 1 |
| 2-6/M82 | 1.21732 | 0.425 |
| 3-2/M82 | 1.48402 | |
| 4-1-1/M82 | 1.73644 | 0.977 |
| 4-1/M82 | 1.12444 | |
| 4-3-2/M82 | 1.27103 | 1 |
| 4-3/M82 | 0.9887 | 1 |
| 5-3/M82 | 0.96138 | 0.642 |
| 6-2/M82 | 1.08043 | 1 |
| 6-3/M82 | 1.0243 | 1 |
| 7-1/M82 | 1.18964 | 0.925 |
| 7-2/M82 | 1.51202 | 0.385 |
| 9-3-2/M82 | 1.01354 | 1 |
Experiment: Tomato introgression line transcript analysis
| hybridization | ratio | FDR (corrected p value) |
|---|
| IL4-4/WTpooled | 0.83252 | 0.243 |
| IL2-6/WTpooled | 1.02423 | 1 |
| IL7-5/WTpooled | 0.49728 | |
| IL7-3/WTpooled | 1.07039 | 1 |
| IL12-4/WTpooled | 1.24115 | 0.646 |
| IL1-4/WTpooled | 0.95296 | 0.834 |
| WT/WTpooled | 0.97529 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
| hybridization | ratio | FDR (corrected p value) |
|---|
| 10 h post inoculation | 1.02064 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000/delat hrp 0h | 1.04305 | 0.921 |
| DC3000/delta hrp 6h | 1.04909 | 0.95 |
| DC3000/delta hrp 12h | 1.19343 | 1 |
| DC3000/delta hrp 24h | 0.69882 | 0.034 |
Experiment: DC3000 effector mutants
| hybridization | ratio | FDR (corrected p value) |
|---|
| DC3000 delta A/DC3000 delta AB | 1.3949 | 0.042 |
| DC3000 delta B/DC3000 delta AB | 1.23686 | 0.164 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
| hybridization | ratio | FDR (corrected p value) |
|---|
| Exp 12h | 1.32484 | 1 |
| Exp 36h | 1.18511 | 1 |
| Exp 60h | 1.06752 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
| hybridization | ratio | FDR (corrected p value) |
|---|
| self-self | 0.98702 | 1 |
| Var 0h | 0.8496 | 0.457 |
| Var 12h I row2-row1 | 1.28533 | 0.406 |
| Var 12h NI row2-row1 | 0.71541 | 0.403 |
| Var 36h I row2-row1 | 0.99343 | 1 |
| Var 36h NI row2-row1 | 1.50343 | 0.482 |
| Var 60h I row2-row1 | 1.19089 | 0.543 |
| Var 60h NI row2-row1 | 1.15376 | 0.904 |
| Time course 0hI-0hNI | 1.07174 | 0.833 |
| Time course 12hI-12hNI | 1.04528 | 0.724 |
| Time course 36hI-36hNI | 0.99138 | 0.68 |
| Time course 60hI-60hNI | 0.41009 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
| hybridization | ratio | FDR (corrected p value) |
|---|
| transgenic ySAMdc/azygous control (mature green) | 1.08987 | 0.798 |
| transgenic ySAMdc/azygous control (breaker) | 0.84612 | 0.251 |
| transgenic ySAMdc/azygous control (red) | 1.40791 | 0.92 |
Experiment: Tomato root culture and Al treatment
| hybridization | ratio | FDR (corrected p value) |
|---|
| Al-treated/control | 1.19631 | 0.059 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
| hybridization | ratio | FDR (corrected p value) |
|---|
| salt-treated/no salt | 1.27751 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
| hybridization | ratio | FDR (corrected p value) |
|---|
| Manapal/WT (mature green) | 0.81037 | 1 |
| Manapal/WT (break) | 0.98332 | 1 |
| Manapal/WT (red) | 1.42486 | 0.137 |
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