Expression of 1-1-7.2.16.5
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.89104 | 0.496 |
27DAP/17DAP | 0.82086 | 0.626 |
39DAP/27DAP | 0.86483 | 0.62 |
41DAP/39DAP | 0.82834 | 0.43 |
42DAP/41DAP | 0.81515 | 0.774 |
43DAP/42DAP | 1.04941 | 0.937 |
47DAP/43DAP | 1.13865 | 1 |
52DAP/47DAP | 1.30425 | 0.637 |
57DAP/52DAP | 1.07699 | 0.985 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.85675 | 0.057 |
17DAP/reference | 0.96777 | 0.664 |
27DAP/reference | 1.01873 | 0.953 |
39DAP/reference | 1.15166 | 0.393 |
41DAP/reference | 1.00718 | 1 |
42DAP/reference | 0.79893 | 0.05 |
43DAP/reference | 0.90239 | 0.029 |
47DAP/reference | 0.9238 | 0.098 |
52DAP/reference | 0.95457 | 0.393 |
57DAP/reference | 0.99438 | 0.701 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.56218 | 0.208 |
27DAP/17DAP | 1.16263 | 0.576 |
39DAP/27DAP | 1.03451 | 0.898 |
41DAP/39DAP | 0.97764 | 0.986 |
42DAP/41DAP | 0.98108 | 0.812 |
43DAP/42DAP | 1.18191 | 0.297 |
47DAP/43DAP | 0.99176 | 0.933 |
52DAP/47DAP | 0.97054 | 0.905 |
57DAP/52DAP | 1.43611 | 0.196 |
57DAP/7DAP | 1.41761 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.2721 | 0.055 |
17DAP/reference | 1.63504 | 0.006 |
27DAP/reference | 1.49035 | 0.006 |
39DAP/reference | 1.48333 | 0.007 |
41DAP/reference | 1.4674 | 0.014 |
42DAP/reference | 1.36964 | 0.037 |
43DAP/reference | 1.54442 | 0.008 |
47DAP/reference | 1.08073 | 0.98 |
52DAP/reference | 1.41762 | 0.017 |
57DAP/reference | 1.32393 | 0.012 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91031 | 0.257 |
17DAP/reference | 0.89949 | 0.189 |
27DAP/reference | 1.07207 | 0.726 |
39DAP/reference | 0.83582 | 0.117 |
41DAP/reference | 0.95294 | 0.315 |
42DAP/reference | 0.88542 | 0.237 |
43DAP/reference | 1.11175 | 0.986 |
47DAP/reference | 1.03357 | 0.589 |
52DAP/reference | 0.93183 | 0.203 |
57DAP/reference | 0.90358 | 0.144 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.40378 | 0.034 |
17DAP/reference | 1.09879 | 0.45 |
27DAP/reference | 1.50828 | 0.015 |
39DAP/reference | 1.45669 | 0.015 |
41DAP/reference | 1.45159 | 0.023 |
42DAP/reference | 1.25773 | 0.03 |
43DAP/reference | 1.45154 | 0.092 |
47DAP/reference | 1.02216 | 1 |
52DAP/reference | 1.56221 | 0.075 |
57DAP/reference | 1.06427 | 0.971 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.98816 | 1 |
26DAP/20DAP | 0.63183 | 1 |
34DAP/26DAP | 1.40492 | 1 |
51DAP/34DAP | 1.03649 | 0.96 |
52DAP/51DAP | 1.1674 | 0.86 |
53DAP/52DAP | 0.88707 | 0.703 |
55DAP/53DAP | 0.8029 | 0.445 |
57DAP/55DAP | 1.18744 | 0.975 |
62DAP/57DAP | 1.03053 | 1 |
68DAP/62DAP | 1.00365 | 0.914 |
68DAP/14DAP | 2.30781 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.05457 | 0.74 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 1.37287 | |
Ripe Pepper/Ripe Tomato | N/A | N/A |
Mature Eggplant/Ripe Tomato | 2.24603 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.92042 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | N/A | N/A |
5-3/M82 | 1.00732 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | N/A | N/A |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.15635 | 0.395 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 0.75953 | |
IL12-4/WTpooled | 1.04616 | 1 |
IL1-4/WTpooled | 1.64596 | 1 |
WT/WTpooled | 0.86823 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.77395 | 0.226 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.11878 | 0.921 |
DC3000/delta hrp 6h | 0.92224 | 1 |
DC3000/delta hrp 12h | 1.18542 | 1 |
DC3000/delta hrp 24h | 1.00802 | 0.966 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.65048 | |
DC3000 delta B/DC3000 delta AB | 0.52048 | 0.02 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.90294 | 1 |
Exp 36h | 0.96174 | 0.879 |
Exp 60h | 0.93668 | 0.855 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03014 | 1 |
Var 0h | 0.90963 | 0.933 |
Var 12h I row2-row1 | 0.90594 | 0.467 |
Var 12h NI row2-row1 | 1.08939 | 1 |
Var 36h I row2-row1 | 0.99428 | 1 |
Var 36h NI row2-row1 | 0.97305 | 0.852 |
Var 60h I row2-row1 | 0.99443 | 1 |
Var 60h NI row2-row1 | 0.8766 | 0.818 |
Time course 0hI-0hNI | 1.05484 | 0.852 |
Time course 12hI-12hNI | 0.87964 | 0.133 |
Time course 36hI-36hNI | 0.76913 | 0.084 |
Time course 60hI-60hNI | 0.53379 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.20765 | 0.318 |
transgenic ySAMdc/azygous control (breaker) | 1.21321 | 0.166 |
transgenic ySAMdc/azygous control (red) | 1.06594 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01611 | 0.587 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.06265 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.98046 | 1 |
Manapal/WT (break) | 0.80686 | 0.299 |
Manapal/WT (red) | 1.0326 | 1 |
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