Expression of 1-1-7.2.16.5

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.891040.496
27DAP/17DAP0.820860.626
39DAP/27DAP0.864830.62
41DAP/39DAP0.828340.43
42DAP/41DAP0.815150.774
43DAP/42DAP1.049410.937
47DAP/43DAP1.138651
52DAP/47DAP1.304250.637
57DAP/52DAP1.076990.985

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.856750.057
17DAP/reference0.967770.664
27DAP/reference1.018730.953
39DAP/reference1.151660.393
41DAP/reference1.007181
42DAP/reference0.798930.05
43DAP/reference0.902390.029
47DAP/reference0.92380.098
52DAP/reference0.954570.393
57DAP/reference0.994380.701

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.562180.208
27DAP/17DAP1.162630.576
39DAP/27DAP1.034510.898
41DAP/39DAP0.977640.986
42DAP/41DAP0.981080.812
43DAP/42DAP1.181910.297
47DAP/43DAP0.991760.933
52DAP/47DAP0.970540.905
57DAP/52DAP1.436110.196
57DAP/7DAP1.417611

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.27210.055
17DAP/reference1.635040.006
27DAP/reference1.490350.006
39DAP/reference1.483330.007
41DAP/reference1.46740.014
42DAP/reference1.369640.037
43DAP/reference1.544420.008
47DAP/reference1.080730.98
52DAP/reference1.417620.017
57DAP/reference1.323930.012

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.910310.257
17DAP/reference0.899490.189
27DAP/reference1.072070.726
39DAP/reference0.835820.117
41DAP/reference0.952940.315
42DAP/reference0.885420.237
43DAP/reference1.111750.986
47DAP/reference1.033570.589
52DAP/reference0.931830.203
57DAP/reference0.903580.144

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.403780.034
17DAP/reference1.098790.45
27DAP/reference1.508280.015
39DAP/reference1.456690.015
41DAP/reference1.451590.023
42DAP/reference1.257730.03
43DAP/reference1.451540.092
47DAP/reference1.022161
52DAP/reference1.562210.075
57DAP/reference1.064270.971

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.988161
26DAP/20DAP0.631831
34DAP/26DAP1.404921
51DAP/34DAP1.036490.96
52DAP/51DAP1.16740.86
53DAP/52DAP0.887070.703
55DAP/53DAP0.80290.445
57DAP/55DAP1.187440.975
62DAP/57DAP1.030531
68DAP/62DAP1.003650.914
68DAP/14DAP2.307810.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.054570.74

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe TomatoN/AN/A
Immature Eggplant/Mature Eggplant1.37287
Ripe Pepper/Ripe TomatoN/AN/A
Mature Eggplant/Ripe Tomato2.24603

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M820.92042
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M82N/AN/A
5-3/M821.007321
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M82N/AN/A
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.156350.395
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled0.75953
IL12-4/WTpooled1.046161
IL1-4/WTpooled1.645961
WT/WTpooled0.868231

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.773950.226

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.118780.921
DC3000/delta hrp 6h0.922241
DC3000/delta hrp 12h1.185421
DC3000/delta hrp 24h1.008020.966

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.65048
DC3000 delta B/DC3000 delta AB0.520480.02

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.902941
Exp 36h0.961740.879
Exp 60h0.936680.855

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.030141
Var 0h0.909630.933
Var 12h I row2-row10.905940.467
Var 12h NI row2-row11.089391
Var 36h I row2-row10.994281
Var 36h NI row2-row10.973050.852
Var 60h I row2-row10.994431
Var 60h NI row2-row10.87660.818
Time course 0hI-0hNI1.054840.852
Time course 12hI-12hNI0.879640.133
Time course 36hI-36hNI0.769130.084
Time course 60hI-60hNI0.533790.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.207650.318
transgenic ySAMdc/azygous control (breaker)1.213210.166
transgenic ySAMdc/azygous control (red)1.065941

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.016110.587

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.062651

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.980461
Manapal/WT (break)0.806860.299
Manapal/WT (red)1.03261