Expression of 1-1-7.2.17.10

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.318830.878
27DAP/17DAP1.215560.832
39DAP/27DAP1.54260.244
41DAP/39DAP1.01710.777
42DAP/41DAP4.194650.02
43DAP/42DAP1.050941
47DAP/43DAP0.845860.499
52DAP/47DAP0.589110.174
57DAP/52DAP1.121651

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.52870.007
17DAP/reference1.348090.092
27DAP/reference1.340590.01
39DAP/reference1.221690.079
41DAP/reference1.4330.036
42DAP/reference1.302630.011
43DAP/reference1.097080.518
47DAP/reference1.291820.002
52DAP/reference1.438370.022
57DAP/reference1.119650.366

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.028220.871
27DAP/17DAP1.243630.136
39DAP/27DAP1.6860.129
41DAP/39DAP1.32710.612
42DAP/41DAP1.149370.8
43DAP/42DAP0.995460.854
47DAP/43DAP2.172120.061
52DAP/47DAP1.584990.343
57DAP/52DAP2.14120.072
57DAP/7DAP16.87720.204

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.618190.056
17DAP/reference1.119890.328
27DAP/reference1.009630.748
39DAP/reference1.281040.066
41DAP/reference1.297520.363
42DAP/reference1.510110.018
43DAP/reference1.007030.665
47DAP/reference1.508480.173
52DAP/reference1.321450.159
57DAP/reference1.139240.41

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.30890.193
17DAP/reference1.382250.02
27DAP/reference1.364490.031
39DAP/reference1.303180.024
41DAP/reference1.354690.026
42DAP/reference1.296150.056
43DAP/reference1.976860.03
47DAP/reference1.432960.013
52DAP/reference1.449080.009
57DAP/reference2.062830.007

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.990520.699
17DAP/reference0.967630.579
27DAP/reference1.000110.843
39DAP/reference0.985960.643
41DAP/reference1.217080.156
42DAP/reference1.001520.816
43DAP/reference1.204310.32
47DAP/reference1.134780.461
52DAP/reference1.13870.324
57DAP/reference1.057920.878

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.998371
26DAP/20DAP0.889841
34DAP/26DAP0.707970.209
51DAP/34DAP1.201560.215
52DAP/51DAP1.071610.776
53DAP/52DAP3.516790.029
55DAP/53DAP2.928550.022
57DAP/55DAP1.980070.34
62DAP/57DAP0.370110.003
68DAP/62DAP1.6981
68DAP/14DAP0.522430.375

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker2.53170.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper3.692950.058
Mature Green Tomato/Ripe Tomato0.697770.132
Immature Eggplant/Mature Eggplant4.703320.05
Ripe Pepper/Ripe Tomato0.358640.224
Mature Eggplant/Ripe Tomato1.909211

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.223990.473
1-1-2/M821.018661
12-2/M821.506170.61
12-4/M820.916231
1-3/M821.93340.248
2-1-1/M820.6903
2-1/M822.105250.175
2-6/M82N/AN/A
3-2/M821.7766
4-1-1/M820.56203
4-1/M821.93041
4-3-2/M822.564880.253
4-3/M823.237470.268
5-3/M822.500050.572
6-2/M824.51131
6-3/M821.209581
7-1/M821.839960.598
7-2/M821.6954
9-3-2/M821.763860.196

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.10888
IL7-5/WTpooled1.21347
IL7-3/WTpooled1.29129
IL12-4/WTpooled1.246180.737
IL1-4/WTpooled0.873640.457
WT/WTpooled1.077591

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.287861

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.161220.875
DC3000/delta hrp 6h1.13615
DC3000/delta hrp 12h0.923961
DC3000/delta hrp 24h0.889960.252

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.413290.048
DC3000 delta B/DC3000 delta AB1.441060.133

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.08321
Exp 36h2.119621
Exp 60h1.604851

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.988931
Var 0h0.52761
Var 12h I row2-row11.16650.795
Var 12h NI row2-row11.536770.34
Var 36h I row2-row10.604770.805
Var 36h NI row2-row11.086870.852
Var 60h I row2-row10.810580.582
Var 60h NI row2-row10.949541
Time course 0hI-0hNI1.050090.852
Time course 12hI-12hNI1.127910.647
Time course 36hI-36hNI3.182240.005
Time course 60hI-60hNI14.61680.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.167670.283
transgenic ySAMdc/azygous control (breaker)0.927730.49
transgenic ySAMdc/azygous control (red)0.973741

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.1891

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.170431
Manapal/WT (break)0.880771
Manapal/WT (red)0.587520.503