Expression of 1-1-7.2.17.10
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.31883 | 0.878 |
27DAP/17DAP | 1.21556 | 0.832 |
39DAP/27DAP | 1.5426 | 0.244 |
41DAP/39DAP | 1.0171 | 0.777 |
42DAP/41DAP | 4.19465 | 0.02 |
43DAP/42DAP | 1.05094 | 1 |
47DAP/43DAP | 0.84586 | 0.499 |
52DAP/47DAP | 0.58911 | 0.174 |
57DAP/52DAP | 1.12165 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.5287 | 0.007 |
17DAP/reference | 1.34809 | 0.092 |
27DAP/reference | 1.34059 | 0.01 |
39DAP/reference | 1.22169 | 0.079 |
41DAP/reference | 1.433 | 0.036 |
42DAP/reference | 1.30263 | 0.011 |
43DAP/reference | 1.09708 | 0.518 |
47DAP/reference | 1.29182 | 0.002 |
52DAP/reference | 1.43837 | 0.022 |
57DAP/reference | 1.11965 | 0.366 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.02822 | 0.871 |
27DAP/17DAP | 1.24363 | 0.136 |
39DAP/27DAP | 1.686 | 0.129 |
41DAP/39DAP | 1.3271 | 0.612 |
42DAP/41DAP | 1.14937 | 0.8 |
43DAP/42DAP | 0.99546 | 0.854 |
47DAP/43DAP | 2.17212 | 0.061 |
52DAP/47DAP | 1.58499 | 0.343 |
57DAP/52DAP | 2.1412 | 0.072 |
57DAP/7DAP | 16.8772 | 0.204 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.61819 | 0.056 |
17DAP/reference | 1.11989 | 0.328 |
27DAP/reference | 1.00963 | 0.748 |
39DAP/reference | 1.28104 | 0.066 |
41DAP/reference | 1.29752 | 0.363 |
42DAP/reference | 1.51011 | 0.018 |
43DAP/reference | 1.00703 | 0.665 |
47DAP/reference | 1.50848 | 0.173 |
52DAP/reference | 1.32145 | 0.159 |
57DAP/reference | 1.13924 | 0.41 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.3089 | 0.193 |
17DAP/reference | 1.38225 | 0.02 |
27DAP/reference | 1.36449 | 0.031 |
39DAP/reference | 1.30318 | 0.024 |
41DAP/reference | 1.35469 | 0.026 |
42DAP/reference | 1.29615 | 0.056 |
43DAP/reference | 1.97686 | 0.03 |
47DAP/reference | 1.43296 | 0.013 |
52DAP/reference | 1.44908 | 0.009 |
57DAP/reference | 2.06283 | 0.007 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99052 | 0.699 |
17DAP/reference | 0.96763 | 0.579 |
27DAP/reference | 1.00011 | 0.843 |
39DAP/reference | 0.98596 | 0.643 |
41DAP/reference | 1.21708 | 0.156 |
42DAP/reference | 1.00152 | 0.816 |
43DAP/reference | 1.20431 | 0.32 |
47DAP/reference | 1.13478 | 0.461 |
52DAP/reference | 1.1387 | 0.324 |
57DAP/reference | 1.05792 | 0.878 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.99837 | 1 |
26DAP/20DAP | 0.88984 | 1 |
34DAP/26DAP | 0.70797 | 0.209 |
51DAP/34DAP | 1.20156 | 0.215 |
52DAP/51DAP | 1.07161 | 0.776 |
53DAP/52DAP | 3.51679 | 0.029 |
55DAP/53DAP | 2.92855 | 0.022 |
57DAP/55DAP | 1.98007 | 0.34 |
62DAP/57DAP | 0.37011 | 0.003 |
68DAP/62DAP | 1.698 | 1 |
68DAP/14DAP | 0.52243 | 0.375 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 2.5317 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 3.69295 | 0.058 |
Mature Green Tomato/Ripe Tomato | 0.69777 | 0.132 |
Immature Eggplant/Mature Eggplant | 4.70332 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.35864 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.90921 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.22399 | 0.473 |
1-1-2/M82 | 1.01866 | 1 |
12-2/M82 | 1.50617 | 0.61 |
12-4/M82 | 0.91623 | 1 |
1-3/M82 | 1.9334 | 0.248 |
2-1-1/M82 | 0.6903 | |
2-1/M82 | 2.10525 | 0.175 |
2-6/M82 | N/A | N/A |
3-2/M82 | 1.7766 | |
4-1-1/M82 | 0.56203 | |
4-1/M82 | 1.93041 | |
4-3-2/M82 | 2.56488 | 0.253 |
4-3/M82 | 3.23747 | 0.268 |
5-3/M82 | 2.50005 | 0.572 |
6-2/M82 | 4.51131 | |
6-3/M82 | 1.20958 | 1 |
7-1/M82 | 1.83996 | 0.598 |
7-2/M82 | 1.6954 | |
9-3-2/M82 | 1.76386 | 0.196 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.10888 | |
IL7-5/WTpooled | 1.21347 | |
IL7-3/WTpooled | 1.29129 | |
IL12-4/WTpooled | 1.24618 | 0.737 |
IL1-4/WTpooled | 0.87364 | 0.457 |
WT/WTpooled | 1.07759 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.28786 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.16122 | 0.875 |
DC3000/delta hrp 6h | 1.13615 | |
DC3000/delta hrp 12h | 0.92396 | 1 |
DC3000/delta hrp 24h | 0.88996 | 0.252 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.41329 | 0.048 |
DC3000 delta B/DC3000 delta AB | 1.44106 | 0.133 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0832 | 1 |
Exp 36h | 2.11962 | 1 |
Exp 60h | 1.60485 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.98893 | 1 |
Var 0h | 0.5276 | 1 |
Var 12h I row2-row1 | 1.1665 | 0.795 |
Var 12h NI row2-row1 | 1.53677 | 0.34 |
Var 36h I row2-row1 | 0.60477 | 0.805 |
Var 36h NI row2-row1 | 1.08687 | 0.852 |
Var 60h I row2-row1 | 0.81058 | 0.582 |
Var 60h NI row2-row1 | 0.94954 | 1 |
Time course 0hI-0hNI | 1.05009 | 0.852 |
Time course 12hI-12hNI | 1.12791 | 0.647 |
Time course 36hI-36hNI | 3.18224 | 0.005 |
Time course 60hI-60hNI | 14.6168 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.16767 | 0.283 |
transgenic ySAMdc/azygous control (breaker) | 0.92773 | 0.49 |
transgenic ySAMdc/azygous control (red) | 0.97374 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.189 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.17043 | 1 |
Manapal/WT (break) | 0.88077 | 1 |
Manapal/WT (red) | 0.58752 | 0.503 |
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