Expression of 1-1-7.2.17.8
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.37197 | 0.394 |
27DAP/17DAP | 0.87146 | 0.746 |
39DAP/27DAP | 1.40233 | 0.344 |
41DAP/39DAP | 1.17436 | 0.293 |
42DAP/41DAP | 1.30298 | 0.832 |
43DAP/42DAP | 1.42835 | 0.348 |
47DAP/43DAP | 0.79351 | 0.369 |
52DAP/47DAP | 1.19164 | 0.758 |
57DAP/52DAP | 1.80392 | 0.859 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99425 | 0.727 |
17DAP/reference | 1.05011 | 0.282 |
27DAP/reference | 0.91588 | 0.137 |
39DAP/reference | 0.95183 | 0.437 |
41DAP/reference | 0.94519 | 0.341 |
42DAP/reference | 0.9203 | 0.009 |
43DAP/reference | 0.98257 | 0.728 |
47DAP/reference | 1.09209 | 0.575 |
52DAP/reference | 1.00954 | 1 |
57DAP/reference | 1.01663 | 0.901 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.93447 | 0.415 |
27DAP/17DAP | 0.91301 | 0.537 |
39DAP/27DAP | 1.1088 | 0.548 |
41DAP/39DAP | 1.07386 | 0.895 |
42DAP/41DAP | 1.16282 | 0.166 |
43DAP/42DAP | 1.33527 | 0.014 |
47DAP/43DAP | 0.90593 | 0.31 |
52DAP/47DAP | 0.80287 | 0.077 |
57DAP/52DAP | 0.93176 | 0.27 |
57DAP/7DAP | 1.62827 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83499 | 0.138 |
17DAP/reference | 0.77636 | 0.124 |
27DAP/reference | 1.12664 | 0.453 |
39DAP/reference | 0.758 | 0.013 |
41DAP/reference | 1.09198 | 0.593 |
42DAP/reference | 0.91821 | 0.304 |
43DAP/reference | 1.55517 | 0.031 |
47DAP/reference | 1.16004 | 0.571 |
52DAP/reference | 1.01504 | 0.802 |
57DAP/reference | 1.08274 | 0.654 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00545 | 1 |
17DAP/reference | 0.97935 | 0.548 |
27DAP/reference | 0.88855 | 0.039 |
39DAP/reference | 1.10984 | 0.657 |
41DAP/reference | 0.95045 | 0.262 |
42DAP/reference | 0.9031 | 0.081 |
43DAP/reference | 0.91522 | 0.201 |
47DAP/reference | 0.8894 | 0.055 |
52DAP/reference | 0.98348 | 0.5 |
57DAP/reference | 0.92313 | 0.278 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.89316 | 0.197 |
17DAP/reference | 0.93037 | 0.203 |
27DAP/reference | 1.20288 | 0.357 |
39DAP/reference | 0.97824 | 0.693 |
41DAP/reference | 1.02942 | 1 |
42DAP/reference | 1.01049 | 1 |
43DAP/reference | 1.12357 | 0.565 |
47DAP/reference | 0.95922 | 0.306 |
52DAP/reference | 1.25166 | 0.357 |
57DAP/reference | 1.03257 | 0.828 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.80845 | 0.961 |
26DAP/20DAP | 2.04485 | 0.099 |
34DAP/26DAP | 0.74353 | 0.086 |
51DAP/34DAP | 0.93865 | 0.64 |
52DAP/51DAP | 0.7837 | 1 |
53DAP/52DAP | 1.16373 | 0.334 |
55DAP/53DAP | 0.84497 | 0.404 |
57DAP/55DAP | 1.58134 | 0.666 |
62DAP/57DAP | 1.3116 | 0.004 |
68DAP/62DAP | 0.90053 | 0.722 |
68DAP/14DAP | 1.36925 | 0.504 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.74134 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.19553 | 0.176 |
Mature Green Tomato/Ripe Tomato | 1.26614 | 0.523 |
Immature Eggplant/Mature Eggplant | 1.29198 | 0.063 |
Ripe Pepper/Ripe Tomato | 0.71454 | 0.224 |
Mature Eggplant/Ripe Tomato | 0.95111 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03383 | 0.877 |
1-1-2/M82 | 0.97264 | 1 |
12-2/M82 | 1.06556 | 1 |
12-4/M82 | 0.95443 | 1 |
1-3/M82 | 0.91192 | 0.501 |
2-1-1/M82 | 1.2376 | 0.457 |
2-1/M82 | 0.88938 | 0.322 |
2-6/M82 | 1.17439 | 0.594 |
3-2/M82 | 0.81265 | |
4-1-1/M82 | 0.94501 | 1 |
4-1/M82 | 1.08867 | |
4-3-2/M82 | 0.80485 | |
4-3/M82 | 0.90565 | 1 |
5-3/M82 | 0.99291 | 1 |
6-2/M82 | 0.98938 | |
6-3/M82 | 0.96181 | 1 |
7-1/M82 | 1.13692 | |
7-2/M82 | 1.1012 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.24243 | 0.427 |
IL7-5/WTpooled | 1.13216 | |
IL7-3/WTpooled | 0.88237 | 0.418 |
IL12-4/WTpooled | 1.02268 | 0.839 |
IL1-4/WTpooled | 1.07843 | 1 |
WT/WTpooled | 1.08193 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.20333 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.01179 | 1 |
DC3000/delta hrp 6h | 1.14509 | 1 |
DC3000/delta hrp 12h | 1.0666 | 1 |
DC3000/delta hrp 24h | 1.16255 | 0.336 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.08843 | 0.515 |
DC3000 delta B/DC3000 delta AB | 1.38467 | 0.118 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.12987 | 1 |
Exp 36h | 1.47376 | 1 |
Exp 60h | 1.35375 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.03921 | 1 |
Var 0h | 0.53349 | 1 |
Var 12h I row2-row1 | 1.1797 | 0.473 |
Var 12h NI row2-row1 | 1.13534 | 0.649 |
Var 36h I row2-row1 | 0.93993 | 1 |
Var 36h NI row2-row1 | 0.92844 | 0.743 |
Var 60h I row2-row1 | 0.84111 | 0.292 |
Var 60h NI row2-row1 | 0.88677 | 0.359 |
Time course 0hI-0hNI | 1.04691 | 1 |
Time course 12hI-12hNI | 0.96043 | 0.701 |
Time course 36hI-36hNI | 1.18471 | 0.07 |
Time course 60hI-60hNI | 2.12247 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.18349 | 0.339 |
transgenic ySAMdc/azygous control (breaker) | 1.0064 | 1 |
transgenic ySAMdc/azygous control (red) | 0.92326 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | N/A | N/A |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.77739 | 0.255 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.14 | 0.307 |
Manapal/WT (break) | 0.85175 | 1 |
Manapal/WT (red) | 0.78832 | 0.181 |
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