Expression of 1-1-7.2.17.8

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.371970.394
27DAP/17DAP0.871460.746
39DAP/27DAP1.402330.344
41DAP/39DAP1.174360.293
42DAP/41DAP1.302980.832
43DAP/42DAP1.428350.348
47DAP/43DAP0.793510.369
52DAP/47DAP1.191640.758
57DAP/52DAP1.803920.859

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.994250.727
17DAP/reference1.050110.282
27DAP/reference0.915880.137
39DAP/reference0.951830.437
41DAP/reference0.945190.341
42DAP/reference0.92030.009
43DAP/reference0.982570.728
47DAP/reference1.092090.575
52DAP/reference1.009541
57DAP/reference1.016630.901

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.934470.415
27DAP/17DAP0.913010.537
39DAP/27DAP1.10880.548
41DAP/39DAP1.073860.895
42DAP/41DAP1.162820.166
43DAP/42DAP1.335270.014
47DAP/43DAP0.905930.31
52DAP/47DAP0.802870.077
57DAP/52DAP0.931760.27
57DAP/7DAP1.628271

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.834990.138
17DAP/reference0.776360.124
27DAP/reference1.126640.453
39DAP/reference0.7580.013
41DAP/reference1.091980.593
42DAP/reference0.918210.304
43DAP/reference1.555170.031
47DAP/reference1.160040.571
52DAP/reference1.015040.802
57DAP/reference1.082740.654

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.005451
17DAP/reference0.979350.548
27DAP/reference0.888550.039
39DAP/reference1.109840.657
41DAP/reference0.950450.262
42DAP/reference0.90310.081
43DAP/reference0.915220.201
47DAP/reference0.88940.055
52DAP/reference0.983480.5
57DAP/reference0.923130.278

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.893160.197
17DAP/reference0.930370.203
27DAP/reference1.202880.357
39DAP/reference0.978240.693
41DAP/reference1.029421
42DAP/reference1.010491
43DAP/reference1.123570.565
47DAP/reference0.959220.306
52DAP/reference1.251660.357
57DAP/reference1.032570.828

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.808450.961
26DAP/20DAP2.044850.099
34DAP/26DAP0.743530.086
51DAP/34DAP0.938650.64
52DAP/51DAP0.78371
53DAP/52DAP1.163730.334
55DAP/53DAP0.844970.404
57DAP/55DAP1.581340.666
62DAP/57DAP1.31160.004
68DAP/62DAP0.900530.722
68DAP/14DAP1.369250.504

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.741340.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.195530.176
Mature Green Tomato/Ripe Tomato1.266140.523
Immature Eggplant/Mature Eggplant1.291980.063
Ripe Pepper/Ripe Tomato0.714540.224
Mature Eggplant/Ripe Tomato0.951111

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.033830.877
1-1-2/M820.972641
12-2/M821.065561
12-4/M820.954431
1-3/M820.911920.501
2-1-1/M821.23760.457
2-1/M820.889380.322
2-6/M821.174390.594
3-2/M820.81265
4-1-1/M820.945011
4-1/M821.08867
4-3-2/M820.80485
4-3/M820.905651
5-3/M820.992911
6-2/M820.98938
6-3/M820.961811
7-1/M821.13692
7-2/M821.10121
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.242430.427
IL7-5/WTpooled1.13216
IL7-3/WTpooled0.882370.418
IL12-4/WTpooled1.022680.839
IL1-4/WTpooled1.078431
WT/WTpooled1.081931

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.203330.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.011791
DC3000/delta hrp 6h1.145091
DC3000/delta hrp 12h1.06661
DC3000/delta hrp 24h1.162550.336

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.088430.515
DC3000 delta B/DC3000 delta AB1.384670.118

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.129871
Exp 36h1.473761
Exp 60h1.353751

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.039211
Var 0h0.533491
Var 12h I row2-row11.17970.473
Var 12h NI row2-row11.135340.649
Var 36h I row2-row10.939931
Var 36h NI row2-row10.928440.743
Var 60h I row2-row10.841110.292
Var 60h NI row2-row10.886770.359
Time course 0hI-0hNI1.046911
Time course 12hI-12hNI0.960430.701
Time course 36hI-36hNI1.184710.07
Time course 60hI-60hNI2.122470.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.183490.339
transgenic ySAMdc/azygous control (breaker)1.00641
transgenic ySAMdc/azygous control (red)0.923261

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/controlN/AN/A

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.777390.255

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.140.307
Manapal/WT (break)0.851751
Manapal/WT (red)0.788320.181