Expression of 1-1-7.2.18.9

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.137710.545
27DAP/17DAP0.96660.873
39DAP/27DAP1.160821
41DAP/39DAP1.211280.765
42DAP/41DAP0.909980.774
43DAP/42DAP1.028491
47DAP/43DAP1.022030.959
52DAP/47DAP0.850030.617
57DAP/52DAP1.032610.983

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.005611
17DAP/reference1.055240.33
27DAP/reference1.023060.709
39DAP/reference1.004051
41DAP/reference0.979670.667
42DAP/reference1.007791
43DAP/reference0.978420.555
47DAP/reference0.996020.674
52DAP/reference0.877620.128
57DAP/reference0.929660.023

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.969990.732
27DAP/17DAP0.757160.58
39DAP/27DAP0.837740.371
41DAP/39DAP1.193140.025
42DAP/41DAP1.00020.853
43DAP/42DAP1.037671
47DAP/43DAP1.021620.92
52DAP/47DAP1.037990.9
57DAP/52DAP1.04460.885
57DAP/7DAP0.929631

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.386550.04
17DAP/reference1.699560.01
27DAP/reference1.37460.014
39DAP/reference1.56310.007
41DAP/reference1.442360.147
42DAP/reference1.455720.024
43DAP/reference1.525990.012
47DAP/reference1.175730.504
52DAP/reference1.245170.038
57DAP/reference1.300890.117

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.992440.884
17DAP/reference0.959790.378
27DAP/reference0.87250.097
39DAP/reference1.003430.702
41DAP/reference0.889480.063
42DAP/reference0.852470.025
43DAP/reference0.973710.569
47DAP/reference0.939030.048
52DAP/reference1.0081
57DAP/reference0.98830.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.221270.122
17DAP/reference1.019750.934
27DAP/reference1.480590.025
39DAP/reference1.449840.016
41DAP/reference1.162570.115
42DAP/reference1.086060.6
43DAP/reference1.060430.79
47DAP/reference0.992060.626
52DAP/reference1.457540.059
57DAP/reference0.78230.05

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.008371
26DAP/20DAP0.975041
34DAP/26DAP1.135771
51DAP/34DAP0.755710.193
52DAP/51DAP1.020051
53DAP/52DAP0.997070.983
55DAP/53DAP0.865530.363
57DAP/55DAP1.112490.915
62DAP/57DAP1.141040.723
68DAP/62DAP1.243421
68DAP/14DAP0.986621

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.268380.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.22752
Mature Green Tomato/Ripe Tomato1.638480.149
Immature Eggplant/Mature Eggplant1.881030.055
Ripe Pepper/Ripe Tomato0.440350.224
Mature Eggplant/Ripe Tomato0.8332

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.014111
1-1-2/M820.88231
12-2/M821.023111
12-4/M821.041450.694
1-3/M820.907630.441
2-1-1/M821.11750.689
2-1/M820.97902
2-6/M821.1036
3-2/M820.93845
4-1-1/M820.959051
4-1/M821.1514
4-3-2/M820.95516
4-3/M821.11311
5-3/M821.03451
6-2/M821.45729
6-3/M820.922121
7-1/M820.83993
7-2/M821.07954
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled1.002871
IL2-6/WTpooled1.00381
IL7-5/WTpooled0.827041
IL7-3/WTpooled0.825870.31
IL12-4/WTpooled1.016210.785
IL1-4/WTpooled1.051911
WT/WTpooled1.015081

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.885880.193

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.001221
DC3000/delta hrp 6h1.215980.978
DC3000/delta hrp 12h1.035211
DC3000/delta hrp 24h1.101740.397

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB3.476570.042
DC3000 delta B/DC3000 delta AB1.911680.179

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.177511
Exp 36h1.464620.489
Exp 60h1.472750.237

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.94498
Var 0h0.991691
Var 12h I row2-row11.106850.736
Var 12h NI row2-row10.946980.82
Var 36h I row2-row10.827571
Var 36h NI row2-row11.14099
Var 60h I row2-row10.562390.285
Var 60h NI row2-row10.944671
Time course 0hI-0hNI1.067340.852
Time course 12hI-12hNI1.155110.272
Time course 36hI-36hNI6.823560.006
Time course 60hI-60hNI35.08910.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.908660.348
transgenic ySAMdc/azygous control (breaker)1.132650.248
transgenic ySAMdc/azygous control (red)1.042930.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.996950.757

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.822630.308

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.707971
Manapal/WT (break)0.729630.299
Manapal/WT (red)0.855310.229