Expression of 1-1-7.2.19.1

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.958130.586
27DAP/17DAP1.017960.945
39DAP/27DAP1.406420.4
41DAP/39DAP1.162480.806
42DAP/41DAP1.015931
43DAP/42DAP1.005380.945
47DAP/43DAP1.534780.576
52DAP/47DAP1.333210.601
57DAP/52DAP1.422030.892

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.080150.76
17DAP/reference0.735430.053
27DAP/reference0.572460.023
39DAP/reference0.695790.024
41DAP/reference0.600650.021
42DAP/reference3.40980.001
43DAP/reference1.023020.882
47DAP/reference1.861170.885
52DAP/reference1.056330.546
57DAP/reference1.064280.845

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.124480.699
27DAP/17DAP0.97740.887
39DAP/27DAP1.23640.447
41DAP/39DAP1.305020.641
42DAP/41DAP1.033471
43DAP/42DAP0.783820.031
47DAP/43DAP1.309830.758
52DAP/47DAP1.117760.598
57DAP/52DAP1.739280.032
57DAP/7DAP1.388481

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.076520.961
17DAP/reference1.171290.092
27DAP/reference1.01440.974
39DAP/reference1.292830.007
41DAP/reference1.352830.028
42DAP/reference1.319080.174
43DAP/reference1.77720.018
47DAP/reference2.050860.025
52DAP/reference1.831660.007
57DAP/reference1.810380.004

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.781970.035
17DAP/reference1.17850.674
27DAP/reference1.494950.373
39DAP/reference1.457940.175
41DAP/reference1.750750.006
42DAP/reference2.648630.016
43DAP/reference0.918940.292
47DAP/reference1.281760.067
52DAP/reference1.600260.041
57DAP/reference1.078690.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.032610.846
17DAP/reference0.803360.167
27DAP/reference1.239040.039
39DAP/reference1.32180.008
41DAP/reference1.387230.1
42DAP/reference1.341630.131
43DAP/reference1.52990.073
47DAP/reference2.372880.006
52DAP/reference1.51280.118
57DAP/reference2.892240.006

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.167780.631
26DAP/20DAP0.845910.512
34DAP/26DAP1.551520.819
51DAP/34DAP1.568830.511
52DAP/51DAP0.98611
53DAP/52DAP1.144680.58
55DAP/53DAP0.987820.838
57DAP/55DAP1.469610.779
62DAP/57DAP1.436080.257
68DAP/62DAP0.783790.505
68DAP/14DAP1.072211

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.804270.269

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato2.855390.017
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato0.800011
Mature Eggplant/Ripe Tomato0.65622

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M820.89463
12-2/M82N/AN/A
12-4/M820.831390.358
1-3/M821.41172
2-1-1/M821.284380.689
2-1/M822.278570.345
2-6/M82N/AN/A
3-2/M822.37611
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M82N/AN/A
4-3/M821.055291
5-3/M821.350540.572
6-2/M821.165951
6-3/M821.07035
7-1/M820.80905
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.978241
IL7-5/WTpooled1.835791
IL7-3/WTpooled1.435011
IL12-4/WTpooled0.903620.71
IL1-4/WTpooled0.953931
WT/WTpooled0.989791

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.963621

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.929271
DC3000/delta hrp 6h4.15695
DC3000/delta hrp 12h1.201541
DC3000/delta hrp 24h2.128840.025

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta AB2.565850.046

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.15491
Exp 36h1.192171
Exp 60h1.342030.399

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.08011
Var 0h0.903021
Var 12h I row2-row11.5660.196
Var 12h NI row2-row11.258211
Var 36h I row2-row10.571910.374
Var 36h NI row2-row11.43993
Var 60h I row2-row11.040011
Var 60h NI row2-row11.70214
Time course 0hI-0hNI1.553160.852
Time course 12hI-12hNI0.87370.33
Time course 36hI-36hNI0.538620.048
Time course 60hI-60hNI0.209620.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.024210.541
transgenic ySAMdc/azygous control (breaker)0.63630.125
transgenic ySAMdc/azygous control (red)0.914321

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.018120.35

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.561430.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.835021
Manapal/WT (break)N/AN/A
Manapal/WT (red)0.943870.728