Expression of 1-1-7.2.19.1
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95813 | 0.586 |
27DAP/17DAP | 1.01796 | 0.945 |
39DAP/27DAP | 1.40642 | 0.4 |
41DAP/39DAP | 1.16248 | 0.806 |
42DAP/41DAP | 1.01593 | 1 |
43DAP/42DAP | 1.00538 | 0.945 |
47DAP/43DAP | 1.53478 | 0.576 |
52DAP/47DAP | 1.33321 | 0.601 |
57DAP/52DAP | 1.42203 | 0.892 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.08015 | 0.76 |
17DAP/reference | 0.73543 | 0.053 |
27DAP/reference | 0.57246 | 0.023 |
39DAP/reference | 0.69579 | 0.024 |
41DAP/reference | 0.60065 | 0.021 |
42DAP/reference | 3.4098 | 0.001 |
43DAP/reference | 1.02302 | 0.882 |
47DAP/reference | 1.86117 | 0.885 |
52DAP/reference | 1.05633 | 0.546 |
57DAP/reference | 1.06428 | 0.845 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.12448 | 0.699 |
27DAP/17DAP | 0.9774 | 0.887 |
39DAP/27DAP | 1.2364 | 0.447 |
41DAP/39DAP | 1.30502 | 0.641 |
42DAP/41DAP | 1.03347 | 1 |
43DAP/42DAP | 0.78382 | 0.031 |
47DAP/43DAP | 1.30983 | 0.758 |
52DAP/47DAP | 1.11776 | 0.598 |
57DAP/52DAP | 1.73928 | 0.032 |
57DAP/7DAP | 1.38848 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07652 | 0.961 |
17DAP/reference | 1.17129 | 0.092 |
27DAP/reference | 1.0144 | 0.974 |
39DAP/reference | 1.29283 | 0.007 |
41DAP/reference | 1.35283 | 0.028 |
42DAP/reference | 1.31908 | 0.174 |
43DAP/reference | 1.7772 | 0.018 |
47DAP/reference | 2.05086 | 0.025 |
52DAP/reference | 1.83166 | 0.007 |
57DAP/reference | 1.81038 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.78197 | 0.035 |
17DAP/reference | 1.1785 | 0.674 |
27DAP/reference | 1.49495 | 0.373 |
39DAP/reference | 1.45794 | 0.175 |
41DAP/reference | 1.75075 | 0.006 |
42DAP/reference | 2.64863 | 0.016 |
43DAP/reference | 0.91894 | 0.292 |
47DAP/reference | 1.28176 | 0.067 |
52DAP/reference | 1.60026 | 0.041 |
57DAP/reference | 1.07869 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03261 | 0.846 |
17DAP/reference | 0.80336 | 0.167 |
27DAP/reference | 1.23904 | 0.039 |
39DAP/reference | 1.3218 | 0.008 |
41DAP/reference | 1.38723 | 0.1 |
42DAP/reference | 1.34163 | 0.131 |
43DAP/reference | 1.5299 | 0.073 |
47DAP/reference | 2.37288 | 0.006 |
52DAP/reference | 1.5128 | 0.118 |
57DAP/reference | 2.89224 | 0.006 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16778 | 0.631 |
26DAP/20DAP | 0.84591 | 0.512 |
34DAP/26DAP | 1.55152 | 0.819 |
51DAP/34DAP | 1.56883 | 0.511 |
52DAP/51DAP | 0.9861 | 1 |
53DAP/52DAP | 1.14468 | 0.58 |
55DAP/53DAP | 0.98782 | 0.838 |
57DAP/55DAP | 1.46961 | 0.779 |
62DAP/57DAP | 1.43608 | 0.257 |
68DAP/62DAP | 0.78379 | 0.505 |
68DAP/14DAP | 1.07221 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.80427 | 0.269 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | N/A | N/A |
Mature Green Tomato/Ripe Tomato | 2.85539 | 0.017 |
Immature Eggplant/Mature Eggplant | N/A | N/A |
Ripe Pepper/Ripe Tomato | 0.80001 | 1 |
Mature Eggplant/Ripe Tomato | 0.65622 | |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | 0.89463 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 0.83139 | 0.358 |
1-3/M82 | 1.41172 | |
2-1-1/M82 | 1.28438 | 0.689 |
2-1/M82 | 2.27857 | 0.345 |
2-6/M82 | N/A | N/A |
3-2/M82 | 2.37611 | |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | N/A | N/A |
4-3/M82 | 1.05529 | 1 |
5-3/M82 | 1.35054 | 0.572 |
6-2/M82 | 1.16595 | 1 |
6-3/M82 | 1.07035 | |
7-1/M82 | 0.80905 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.97824 | 1 |
IL7-5/WTpooled | 1.83579 | 1 |
IL7-3/WTpooled | 1.43501 | 1 |
IL12-4/WTpooled | 0.90362 | 0.71 |
IL1-4/WTpooled | 0.95393 | 1 |
WT/WTpooled | 0.98979 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.96362 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.92927 | 1 |
DC3000/delta hrp 6h | 4.15695 | |
DC3000/delta hrp 12h | 1.20154 | 1 |
DC3000/delta hrp 24h | 2.12884 | 0.025 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | 2.56585 | 0.046 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.1549 | 1 |
Exp 36h | 1.19217 | 1 |
Exp 60h | 1.34203 | 0.399 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.0801 | 1 |
Var 0h | 0.90302 | 1 |
Var 12h I row2-row1 | 1.566 | 0.196 |
Var 12h NI row2-row1 | 1.25821 | 1 |
Var 36h I row2-row1 | 0.57191 | 0.374 |
Var 36h NI row2-row1 | 1.43993 | |
Var 60h I row2-row1 | 1.04001 | 1 |
Var 60h NI row2-row1 | 1.70214 | |
Time course 0hI-0hNI | 1.55316 | 0.852 |
Time course 12hI-12hNI | 0.8737 | 0.33 |
Time course 36hI-36hNI | 0.53862 | 0.048 |
Time course 60hI-60hNI | 0.20962 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.02421 | 0.541 |
transgenic ySAMdc/azygous control (breaker) | 0.6363 | 0.125 |
transgenic ySAMdc/azygous control (red) | 0.91432 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.01812 | 0.35 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.56143 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.83502 | 1 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 0.94387 | 0.728 |
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