Expression of 1-1-7.2.19.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.864370.395
27DAP/17DAP1.053821
39DAP/27DAP1.159220.677
41DAP/39DAP1.145870.765
42DAP/41DAP1.284080.899
43DAP/42DAP0.834060.741
47DAP/43DAP0.931010.693
52DAP/47DAP1.552540.525
57DAP/52DAP0.810440.759

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.217170.29
17DAP/reference1.454260.053
27DAP/reference1.352880.028
39DAP/reference1.235030.514
41DAP/reference1.528810.026
42DAP/reference1.408690.007
43DAP/reference1.067380.957
47DAP/reference1.063890.612
52DAP/reference1.205610.016
57DAP/reference1.059850.802

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.008110.871
27DAP/17DAP1.003930.969
39DAP/27DAP1.021511
41DAP/39DAP1.034991
42DAP/41DAP1.064330.886
43DAP/42DAP0.942120.576
47DAP/43DAP1.045590.95
52DAP/47DAP1.052850.915
57DAP/52DAP0.99110.833
57DAP/7DAP0.925731

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.12490.292
17DAP/reference1.125140.025
27DAP/reference1.090550.06
39DAP/reference1.0620.077
41DAP/reference1.083360.325
42DAP/reference1.309170.132
43DAP/reference1.043970.746
47DAP/reference1.015361
52DAP/reference1.159610.01
57DAP/reference1.205980.17

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.753540.083
17DAP/reference1.205510.139
27DAP/reference1.214620.359
39DAP/reference1.164280.764
41DAP/reference1.24240.094
42DAP/reference1.227890.099
43DAP/reference1.176040.453
47DAP/reference1.244950.051
52DAP/reference1.184990.629
57DAP/reference0.796560.085

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.040260.616
17DAP/reference1.148570.757
27DAP/reference1.019290.721
39DAP/reference1.058280.245
41DAP/reference1.05440.383
42DAP/reference1.065360.47
43DAP/reference1.020281
47DAP/reference1.059490.687
52DAP/reference1.025680.928
57DAP/reference0.956720.5

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.284030.966
26DAP/20DAP1.068530.886
34DAP/26DAP0.943480.783
51DAP/34DAP0.987680.901
52DAP/51DAP1.057940.503
53DAP/52DAP0.899360.374
55DAP/53DAP1.069830.477
57DAP/55DAP1.044131
62DAP/57DAP1.030561
68DAP/62DAP0.846960.722
68DAP/14DAP2.26697

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker1.013760.696

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe PepperN/AN/A
Mature Green Tomato/Ripe Tomato1.1230.948
Immature Eggplant/Mature EggplantN/AN/A
Ripe Pepper/Ripe Tomato1.17965
Mature Eggplant/Ripe Tomato1.063131

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.886770.907
1-1-2/M821.055221
12-2/M821.05898
12-4/M821.003461
1-3/M821.18053
2-1-1/M82N/AN/A
2-1/M820.68652
2-6/M821.184670.505
3-2/M820.87194
4-1-1/M820.967721
4-1/M821.14655
4-3-2/M821.15044
4-3/M821.205531
5-3/M821.122781
6-2/M821.2501
6-3/M820.92485
7-1/M820.963
7-2/M821.158050.385
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.809060.473
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.179661
IL12-4/WTpooled1.19470.695
IL1-4/WTpooled0.509280.699
WT/WTpooled0.938391

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.026881

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.050930.921
DC3000/delta hrp 6hN/AN/A
DC3000/delta hrp 12h1.224391
DC3000/delta hrp 24h1.037690.673

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.889260.413
DC3000 delta B/DC3000 delta AB0.960580.543

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12hN/AN/A
Exp 36hN/AN/A
Exp 60hN/AN/A

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self0.971761
Var 0h0.786331
Var 12h I row2-row11.021781
Var 12h NI row2-row11.146321
Var 36h I row2-row10.95441
Var 36h NI row2-row10.975480.791
Var 60h I row2-row11.029641
Var 60h NI row2-row11.052991
Time course 0hI-0hNI1.001431
Time course 12hI-12hNI1.062820.621
Time course 36hI-36hNI0.901060.051
Time course 60hI-60hNI0.966990.646

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)N/AN/A
transgenic ySAMdc/azygous control (breaker)N/AN/A
transgenic ySAMdc/azygous control (red)0.574081

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.969890.517

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.198980.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)N/AN/A
Manapal/WT (break)0.912281
Manapal/WT (red)1.141251