Expression of 1-1-7.2.19.17

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.087690.838
27DAP/17DAP1.005491
39DAP/27DAP1.111770.845
41DAP/39DAP1.190860.473
42DAP/41DAP0.974231
43DAP/42DAP1.049781
47DAP/43DAP1.247760.481
52DAP/47DAP0.754110.498
57DAP/52DAP1.26910.912

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.073290.685
17DAP/reference0.949820.503
27DAP/reference1.010530.867
39DAP/reference0.950330.164
41DAP/reference0.843710.065
42DAP/reference1.02211
43DAP/reference0.903280.103
47DAP/reference1.028370.646
52DAP/reference1.126750.302
57DAP/reference1.275710.063

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.190760.192
27DAP/17DAP0.973630.887
39DAP/27DAP1.135320.447
41DAP/39DAP1.066780.827
42DAP/41DAP1.051250.947
43DAP/42DAP0.98970.902
47DAP/43DAP1.068070.765
52DAP/47DAP0.995020.962
57DAP/52DAP0.959170.668
57DAP/7DAP1.144970.23

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.952870.326
17DAP/reference1.007151
27DAP/reference0.909140.135
39DAP/reference0.883010.17
41DAP/reference0.843090.07
42DAP/reference0.845530.09
43DAP/reference1.056440.537
47DAP/reference0.995131
52DAP/reference0.801520.016
57DAP/reference0.877260.132

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.0740.787
17DAP/reference1.136170.223
27DAP/reference1.153860.278
39DAP/reference1.183050.106
41DAP/reference1.074930.878
42DAP/reference1.019161
43DAP/reference1.141590.219
47DAP/reference1.042050.454
52DAP/reference1.040410.938
57DAP/reference0.946760.384

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.965530.489
17DAP/reference0.985680.751
27DAP/reference0.991720.691
39DAP/reference0.983490.591
41DAP/reference1.100190.213
42DAP/reference1.112560.433
43DAP/reference1.114640.426
47DAP/reference0.964670.434
52DAP/reference1.731160.301
57DAP/reference1.307870.113

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.030370.966
26DAP/20DAP1.741450.142
34DAP/26DAP0.926220.811
51DAP/34DAP1.216490.207
52DAP/51DAP0.953831
53DAP/52DAP0.8840.572
55DAP/53DAP0.978350.852
57DAP/55DAP2.934860.818
62DAP/57DAP0.668180.003
68DAP/62DAP1.318770.778
68DAP/14DAP1.08366

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.881250.253

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.165350.113
Mature Green Tomato/Ripe Tomato0.739610.182
Immature Eggplant/Mature Eggplant0.823740.067
Ripe Pepper/Ripe Tomato1.1981
Mature Eggplant/Ripe Tomato0.630950.234

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M82N/AN/A
1-1-2/M82N/AN/A
12-2/M82N/AN/A
12-4/M821.10281
1-3/M82N/AN/A
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M82N/AN/A
3-2/M82N/AN/A
4-1-1/M82N/AN/A
4-1/M82N/AN/A
4-3-2/M821.031781
4-3/M821.08883
5-3/M821.162871
6-2/M82N/AN/A
6-3/M82N/AN/A
7-1/M821.14155
7-2/M82N/AN/A
9-3-2/M82N/AN/A

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled1.171190.419
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.147421
IL12-4/WTpooled0.907940.71
IL1-4/WTpooled1.034311
WT/WTpooled0.991221

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.90710.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.036210.921
DC3000/delta hrp 6h1.232561
DC3000/delta hrp 12h0.957651
DC3000/delta hrp 24h1.054010.988

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.025281
DC3000 delta B/DC3000 delta AB1.550030.121

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.025111
Exp 36h0.948340.699
Exp 60h1.010561

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.000221
Var 0h0.96761
Var 12h I row2-row10.923830.357
Var 12h NI row2-row11.136450.649
Var 36h I row2-row11.131350.41
Var 36h NI row2-row11.086951
Var 60h I row2-row10.769260.306
Var 60h NI row2-row10.861490.63
Time course 0hI-0hNI0.9710.852
Time course 12hI-12hNI1.029390.824
Time course 36hI-36hNI1.176850.248
Time course 60hI-60hNI1.663270.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.982670.614
transgenic ySAMdc/azygous control (breaker)0.813020.173
transgenic ySAMdc/azygous control (red)0.928121

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.963920.295

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.019421

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.897691
Manapal/WT (break)1.110840.381
Manapal/WT (red)1.143111