Expression of 1-1-7.2.19.17
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.08769 | 0.838 |
27DAP/17DAP | 1.00549 | 1 |
39DAP/27DAP | 1.11177 | 0.845 |
41DAP/39DAP | 1.19086 | 0.473 |
42DAP/41DAP | 0.97423 | 1 |
43DAP/42DAP | 1.04978 | 1 |
47DAP/43DAP | 1.24776 | 0.481 |
52DAP/47DAP | 0.75411 | 0.498 |
57DAP/52DAP | 1.2691 | 0.912 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07329 | 0.685 |
17DAP/reference | 0.94982 | 0.503 |
27DAP/reference | 1.01053 | 0.867 |
39DAP/reference | 0.95033 | 0.164 |
41DAP/reference | 0.84371 | 0.065 |
42DAP/reference | 1.0221 | 1 |
43DAP/reference | 0.90328 | 0.103 |
47DAP/reference | 1.02837 | 0.646 |
52DAP/reference | 1.12675 | 0.302 |
57DAP/reference | 1.27571 | 0.063 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.19076 | 0.192 |
27DAP/17DAP | 0.97363 | 0.887 |
39DAP/27DAP | 1.13532 | 0.447 |
41DAP/39DAP | 1.06678 | 0.827 |
42DAP/41DAP | 1.05125 | 0.947 |
43DAP/42DAP | 0.9897 | 0.902 |
47DAP/43DAP | 1.06807 | 0.765 |
52DAP/47DAP | 0.99502 | 0.962 |
57DAP/52DAP | 0.95917 | 0.668 |
57DAP/7DAP | 1.14497 | 0.23 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.95287 | 0.326 |
17DAP/reference | 1.00715 | 1 |
27DAP/reference | 0.90914 | 0.135 |
39DAP/reference | 0.88301 | 0.17 |
41DAP/reference | 0.84309 | 0.07 |
42DAP/reference | 0.84553 | 0.09 |
43DAP/reference | 1.05644 | 0.537 |
47DAP/reference | 0.99513 | 1 |
52DAP/reference | 0.80152 | 0.016 |
57DAP/reference | 0.87726 | 0.132 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.074 | 0.787 |
17DAP/reference | 1.13617 | 0.223 |
27DAP/reference | 1.15386 | 0.278 |
39DAP/reference | 1.18305 | 0.106 |
41DAP/reference | 1.07493 | 0.878 |
42DAP/reference | 1.01916 | 1 |
43DAP/reference | 1.14159 | 0.219 |
47DAP/reference | 1.04205 | 0.454 |
52DAP/reference | 1.04041 | 0.938 |
57DAP/reference | 0.94676 | 0.384 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.96553 | 0.489 |
17DAP/reference | 0.98568 | 0.751 |
27DAP/reference | 0.99172 | 0.691 |
39DAP/reference | 0.98349 | 0.591 |
41DAP/reference | 1.10019 | 0.213 |
42DAP/reference | 1.11256 | 0.433 |
43DAP/reference | 1.11464 | 0.426 |
47DAP/reference | 0.96467 | 0.434 |
52DAP/reference | 1.73116 | 0.301 |
57DAP/reference | 1.30787 | 0.113 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.03037 | 0.966 |
26DAP/20DAP | 1.74145 | 0.142 |
34DAP/26DAP | 0.92622 | 0.811 |
51DAP/34DAP | 1.21649 | 0.207 |
52DAP/51DAP | 0.95383 | 1 |
53DAP/52DAP | 0.884 | 0.572 |
55DAP/53DAP | 0.97835 | 0.852 |
57DAP/55DAP | 2.93486 | 0.818 |
62DAP/57DAP | 0.66818 | 0.003 |
68DAP/62DAP | 1.31877 | 0.778 |
68DAP/14DAP | 1.08366 | |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.88125 | 0.253 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.16535 | 0.113 |
Mature Green Tomato/Ripe Tomato | 0.73961 | 0.182 |
Immature Eggplant/Mature Eggplant | 0.82374 | 0.067 |
Ripe Pepper/Ripe Tomato | 1.198 | 1 |
Mature Eggplant/Ripe Tomato | 0.63095 | 0.234 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | N/A | N/A |
1-1-2/M82 | N/A | N/A |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.10281 | |
1-3/M82 | N/A | N/A |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | N/A | N/A |
3-2/M82 | N/A | N/A |
4-1-1/M82 | N/A | N/A |
4-1/M82 | N/A | N/A |
4-3-2/M82 | 1.03178 | 1 |
4-3/M82 | 1.08883 | |
5-3/M82 | 1.16287 | 1 |
6-2/M82 | N/A | N/A |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.14155 | |
7-2/M82 | N/A | N/A |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 1.17119 | 0.419 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.14742 | 1 |
IL12-4/WTpooled | 0.90794 | 0.71 |
IL1-4/WTpooled | 1.03431 | 1 |
WT/WTpooled | 0.99122 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9071 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.03621 | 0.921 |
DC3000/delta hrp 6h | 1.23256 | 1 |
DC3000/delta hrp 12h | 0.95765 | 1 |
DC3000/delta hrp 24h | 1.05401 | 0.988 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.02528 | 1 |
DC3000 delta B/DC3000 delta AB | 1.55003 | 0.121 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.02511 | 1 |
Exp 36h | 0.94834 | 0.699 |
Exp 60h | 1.01056 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.00022 | 1 |
Var 0h | 0.9676 | 1 |
Var 12h I row2-row1 | 0.92383 | 0.357 |
Var 12h NI row2-row1 | 1.13645 | 0.649 |
Var 36h I row2-row1 | 1.13135 | 0.41 |
Var 36h NI row2-row1 | 1.08695 | 1 |
Var 60h I row2-row1 | 0.76926 | 0.306 |
Var 60h NI row2-row1 | 0.86149 | 0.63 |
Time course 0hI-0hNI | 0.971 | 0.852 |
Time course 12hI-12hNI | 1.02939 | 0.824 |
Time course 36hI-36hNI | 1.17685 | 0.248 |
Time course 60hI-60hNI | 1.66327 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.98267 | 0.614 |
transgenic ySAMdc/azygous control (breaker) | 0.81302 | 0.173 |
transgenic ySAMdc/azygous control (red) | 0.92812 | 1 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.96392 | 0.295 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.01942 | 1 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.89769 | 1 |
Manapal/WT (break) | 1.11084 | 0.381 |
Manapal/WT (red) | 1.14311 | 1 |
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