Expression of 1-1-7.2.19.4

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.919550.596
27DAP/17DAP1.548560.677
39DAP/27DAP0.930450.62
41DAP/39DAP1.022330.962
42DAP/41DAP1.345550.466
43DAP/42DAP0.920740.841
47DAP/43DAP1.153660.873
52DAP/47DAP1.057950.957
57DAP/52DAP1.039111

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.372210.03
17DAP/reference1.382070.041
27DAP/reference1.216940.034
39DAP/reference1.184720.125
41DAP/reference1.447450.012
42DAP/reference1.169970.055
43DAP/reference1.10340.382
47DAP/reference1.127380.042
52DAP/reference1.085340.766
57DAP/reference1.012051

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP1.428540.201
27DAP/17DAP1.21920.447
39DAP/27DAP1.243510.076
41DAP/39DAP1.143860.801
42DAP/41DAP1.118620.478
43DAP/42DAP0.906770.447
47DAP/43DAP1.415070.054
52DAP/47DAP1.066180.799
57DAP/52DAP1.44610.101
57DAP/7DAP1.646640.249

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.936250.296
17DAP/reference1.005370.599
27DAP/reference0.844460.018
39DAP/reference1.026570.705
41DAP/reference1.013931
42DAP/reference0.92110.222
43DAP/reference0.849140.023
47DAP/reference1.113460.804
52DAP/reference0.884090.179
57DAP/reference1.029170.804

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.156730.129
17DAP/reference1.447670.01
27DAP/reference1.176720.195
39DAP/reference1.497240.011
41DAP/reference1.529860.024
42DAP/reference1.215150.057
43DAP/reference1.376680.07
47DAP/reference1.325470.022
52DAP/reference1.58020.023
57DAP/reference1.749350.008

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.919450.311
17DAP/reference0.989720.751
27DAP/reference0.996870.805
39DAP/reference0.936440.328
41DAP/reference0.978610.56
42DAP/reference0.954760.552
43DAP/reference1.077210.744
47DAP/reference1.273240.028
52DAP/reference0.92770.482
57DAP/reference1.187730.291

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP0.920651
26DAP/20DAP0.939671
34DAP/26DAP1.4681
51DAP/34DAP1.157480.898
52DAP/51DAP1.666680.033
53DAP/52DAP1.085110.797
55DAP/53DAP1.338920.312
57DAP/55DAP1.112550.986
62DAP/57DAP0.779490.162
68DAP/62DAP0.730620.263
68DAP/14DAP0.656311

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.851280.129

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.01251
Mature Green Tomato/Ripe Tomato1.11551
Immature Eggplant/Mature Eggplant2.274330.05
Ripe Pepper/Ripe Tomato1.187441
Mature Eggplant/Ripe Tomato0.969261

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.038581
1-1-2/M821.032541
12-2/M820.852760.692
12-4/M821.01131
1-3/M821.014671
2-1-1/M820.939250.92
2-1/M820.946651
2-6/M821.089280.594
3-2/M820.94495
4-1-1/M821.079081
4-1/M820.86841
4-3-2/M820.954391
4-3/M820.99881
5-3/M820.920260.642
6-2/M820.90343
6-3/M821.029771
7-1/M820.787490.452
7-2/M821.128730.324
9-3-2/M820.850410.355

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.926650.321
IL2-6/WTpooled0.882290.348
IL7-5/WTpooled1.035141
IL7-3/WTpooled1.069031
IL12-4/WTpooled1.019960.891
IL1-4/WTpooled0.992691
WT/WTpooled0.971691

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.946041

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h0.947111
DC3000/delta hrp 6h1.010641
DC3000/delta hrp 12h1.0611
DC3000/delta hrp 24h0.956850.7

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.135410.134
DC3000 delta B/DC3000 delta AB1.247320.201

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.969491
Exp 36h0.971190.943
Exp 60h1.07611

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-self1.064241
Var 0h0.709990.274
Var 12h I row2-row10.987231
Var 12h NI row2-row10.958590.367
Var 36h I row2-row10.813650.805
Var 36h NI row2-row10.804810.549
Var 60h I row2-row11.62851
Var 60h NI row2-row11.138260.904
Time course 0hI-0hNI1.156720.719
Time course 12hI-12hNI1.084060.684
Time course 36hI-36hNI1.095790.799
Time course 60hI-60hNI2.028460.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.869270.315
transgenic ySAMdc/azygous control (breaker)0.771350.173
transgenic ySAMdc/azygous control (red)1.129210.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control0.950110.099

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.118620.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)1.889610.083
Manapal/WT (break)N/AN/A
Manapal/WT (red)1.08551