Expression of 1-1-7.2.19.4
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91955 | 0.596 |
27DAP/17DAP | 1.54856 | 0.677 |
39DAP/27DAP | 0.93045 | 0.62 |
41DAP/39DAP | 1.02233 | 0.962 |
42DAP/41DAP | 1.34555 | 0.466 |
43DAP/42DAP | 0.92074 | 0.841 |
47DAP/43DAP | 1.15366 | 0.873 |
52DAP/47DAP | 1.05795 | 0.957 |
57DAP/52DAP | 1.03911 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.37221 | 0.03 |
17DAP/reference | 1.38207 | 0.041 |
27DAP/reference | 1.21694 | 0.034 |
39DAP/reference | 1.18472 | 0.125 |
41DAP/reference | 1.44745 | 0.012 |
42DAP/reference | 1.16997 | 0.055 |
43DAP/reference | 1.1034 | 0.382 |
47DAP/reference | 1.12738 | 0.042 |
52DAP/reference | 1.08534 | 0.766 |
57DAP/reference | 1.01205 | 1 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 1.42854 | 0.201 |
27DAP/17DAP | 1.2192 | 0.447 |
39DAP/27DAP | 1.24351 | 0.076 |
41DAP/39DAP | 1.14386 | 0.801 |
42DAP/41DAP | 1.11862 | 0.478 |
43DAP/42DAP | 0.90677 | 0.447 |
47DAP/43DAP | 1.41507 | 0.054 |
52DAP/47DAP | 1.06618 | 0.799 |
57DAP/52DAP | 1.4461 | 0.101 |
57DAP/7DAP | 1.64664 | 0.249 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.93625 | 0.296 |
17DAP/reference | 1.00537 | 0.599 |
27DAP/reference | 0.84446 | 0.018 |
39DAP/reference | 1.02657 | 0.705 |
41DAP/reference | 1.01393 | 1 |
42DAP/reference | 0.9211 | 0.222 |
43DAP/reference | 0.84914 | 0.023 |
47DAP/reference | 1.11346 | 0.804 |
52DAP/reference | 0.88409 | 0.179 |
57DAP/reference | 1.02917 | 0.804 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.15673 | 0.129 |
17DAP/reference | 1.44767 | 0.01 |
27DAP/reference | 1.17672 | 0.195 |
39DAP/reference | 1.49724 | 0.011 |
41DAP/reference | 1.52986 | 0.024 |
42DAP/reference | 1.21515 | 0.057 |
43DAP/reference | 1.37668 | 0.07 |
47DAP/reference | 1.32547 | 0.022 |
52DAP/reference | 1.5802 | 0.023 |
57DAP/reference | 1.74935 | 0.008 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.91945 | 0.311 |
17DAP/reference | 0.98972 | 0.751 |
27DAP/reference | 0.99687 | 0.805 |
39DAP/reference | 0.93644 | 0.328 |
41DAP/reference | 0.97861 | 0.56 |
42DAP/reference | 0.95476 | 0.552 |
43DAP/reference | 1.07721 | 0.744 |
47DAP/reference | 1.27324 | 0.028 |
52DAP/reference | 0.9277 | 0.482 |
57DAP/reference | 1.18773 | 0.291 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 0.92065 | 1 |
26DAP/20DAP | 0.93967 | 1 |
34DAP/26DAP | 1.468 | 1 |
51DAP/34DAP | 1.15748 | 0.898 |
52DAP/51DAP | 1.66668 | 0.033 |
53DAP/52DAP | 1.08511 | 0.797 |
55DAP/53DAP | 1.33892 | 0.312 |
57DAP/55DAP | 1.11255 | 0.986 |
62DAP/57DAP | 0.77949 | 0.162 |
68DAP/62DAP | 0.73062 | 0.263 |
68DAP/14DAP | 0.65631 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.85128 | 0.129 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.0125 | 1 |
Mature Green Tomato/Ripe Tomato | 1.1155 | 1 |
Immature Eggplant/Mature Eggplant | 2.27433 | 0.05 |
Ripe Pepper/Ripe Tomato | 1.18744 | 1 |
Mature Eggplant/Ripe Tomato | 0.96926 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.03858 | 1 |
1-1-2/M82 | 1.03254 | 1 |
12-2/M82 | 0.85276 | 0.692 |
12-4/M82 | 1.0113 | 1 |
1-3/M82 | 1.01467 | 1 |
2-1-1/M82 | 0.93925 | 0.92 |
2-1/M82 | 0.94665 | 1 |
2-6/M82 | 1.08928 | 0.594 |
3-2/M82 | 0.94495 | |
4-1-1/M82 | 1.07908 | 1 |
4-1/M82 | 0.86841 | |
4-3-2/M82 | 0.95439 | 1 |
4-3/M82 | 0.9988 | 1 |
5-3/M82 | 0.92026 | 0.642 |
6-2/M82 | 0.90343 | |
6-3/M82 | 1.02977 | 1 |
7-1/M82 | 0.78749 | 0.452 |
7-2/M82 | 1.12873 | 0.324 |
9-3-2/M82 | 0.85041 | 0.355 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.92665 | 0.321 |
IL2-6/WTpooled | 0.88229 | 0.348 |
IL7-5/WTpooled | 1.03514 | 1 |
IL7-3/WTpooled | 1.06903 | 1 |
IL12-4/WTpooled | 1.01996 | 0.891 |
IL1-4/WTpooled | 0.99269 | 1 |
WT/WTpooled | 0.97169 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.94604 | 1 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.94711 | 1 |
DC3000/delta hrp 6h | 1.01064 | 1 |
DC3000/delta hrp 12h | 1.061 | 1 |
DC3000/delta hrp 24h | 0.95685 | 0.7 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.13541 | 0.134 |
DC3000 delta B/DC3000 delta AB | 1.24732 | 0.201 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96949 | 1 |
Exp 36h | 0.97119 | 0.943 |
Exp 60h | 1.0761 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 1.06424 | 1 |
Var 0h | 0.70999 | 0.274 |
Var 12h I row2-row1 | 0.98723 | 1 |
Var 12h NI row2-row1 | 0.95859 | 0.367 |
Var 36h I row2-row1 | 0.81365 | 0.805 |
Var 36h NI row2-row1 | 0.80481 | 0.549 |
Var 60h I row2-row1 | 1.6285 | 1 |
Var 60h NI row2-row1 | 1.13826 | 0.904 |
Time course 0hI-0hNI | 1.15672 | 0.719 |
Time course 12hI-12hNI | 1.08406 | 0.684 |
Time course 36hI-36hNI | 1.09579 | 0.799 |
Time course 60hI-60hNI | 2.02846 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.86927 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 0.77135 | 0.173 |
transgenic ySAMdc/azygous control (red) | 1.12921 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 0.95011 | 0.099 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11862 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 1.88961 | 0.083 |
Manapal/WT (break) | N/A | N/A |
Manapal/WT (red) | 1.0855 | 1 |
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