Expression of 1-1-7.2.2.13

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.917330.511
27DAP/17DAP0.824580.585
39DAP/27DAP1.138780.765
41DAP/39DAP1.540650.266
42DAP/41DAP0.978891
43DAP/42DAP0.816140.613
47DAP/43DAP0.930850.699
52DAP/47DAP1.824820.12
57DAP/52DAP0.696230.507

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.005160.787
17DAP/reference0.999151
27DAP/reference0.890250.092
39DAP/reference0.999671
41DAP/reference0.952810.434
42DAP/reference1.093561
43DAP/reference0.991960.82
47DAP/reference0.971560.279
52DAP/reference0.866080.055
57DAP/reference0.938990.235

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.762120.153
27DAP/17DAP0.94450.854
39DAP/27DAP1.078480.615
41DAP/39DAP1.038951
42DAP/41DAP1.093510.773
43DAP/42DAP0.988060.928
47DAP/43DAP1.127650.581
52DAP/47DAP0.986520.913
57DAP/52DAP0.951010.601
57DAP/7DAP0.789461

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.840.108
17DAP/reference0.789140.014
27DAP/reference0.818040.01
39DAP/reference0.766260.011
41DAP/reference0.812490.023
42DAP/reference0.804920.012
43DAP/reference0.716170.011
47DAP/reference0.868160.101
52DAP/reference0.818970.03
57DAP/reference0.737910.006

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.201890.056
17DAP/reference1.171860.019
27DAP/reference1.126680.166
39DAP/reference0.803030.018
41DAP/reference1.014541
42DAP/reference0.950120.212
43DAP/reference1.305840.027
47DAP/reference1.049150.366
52DAP/reference1.126770.181
57DAP/reference1.350950.123

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.837910.044
17DAP/reference0.921290.358
27DAP/reference0.760390.031
39DAP/reference0.755570.022
41DAP/reference0.85450.025
42DAP/reference0.834140.036
43DAP/reference0.829380.02
47DAP/reference0.948980.396
52DAP/reference0.734650.118
57DAP/reference0.797880.109

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.064740.966
26DAP/20DAP0.865730.512
34DAP/26DAP1.405571
51DAP/34DAP0.923260.492
52DAP/51DAP1.12780.616
53DAP/52DAP0.934940.695
55DAP/53DAP1.054150.82
57DAP/55DAP0.887040.583
62DAP/57DAP1.353330.047
68DAP/62DAP0.748370.505
68DAP/14DAP0.982391

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.948570.493

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.55022
Mature Green Tomato/Ripe Tomato1.169680.478
Immature Eggplant/Mature Eggplant8.101180.05
Ripe Pepper/Ripe Tomato0.563520.293
Mature Eggplant/Ripe Tomato1.55591

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M820.952940.944
1-1-2/M821.10788
12-2/M82N/AN/A
12-4/M821.016961
1-3/M820.933030.378
2-1-1/M82N/AN/A
2-1/M82N/AN/A
2-6/M821.047411
3-2/M820.92109
4-1-1/M821.044451
4-1/M821.103691
4-3-2/M820.741671
4-3/M820.7910.578
5-3/M820.933771
6-2/M820.737490.497
6-3/M82N/AN/A
7-1/M821.0353
7-2/M821.02327
9-3-2/M821.005021

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooledN/AN/A
IL2-6/WTpooled0.887471
IL7-5/WTpooledN/AN/A
IL7-3/WTpooled1.15291
IL12-4/WTpooled0.994571
IL1-4/WTpooledN/AN/A
WT/WTpooled1.099190.957

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.199760.853

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.028470.921
DC3000/delta hrp 6h1.121061
DC3000/delta hrp 12h0.925961
DC3000/delta hrp 24h1.251810.043

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB1.154950.094
DC3000 delta B/DC3000 delta AB1.174280.282

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.966921
Exp 36h1.274240.489
Exp 60h1.243160.283

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h0.408911
Var 12h I row2-row11.087010.736
Var 12h NI row2-row11.267870.649
Var 36h I row2-row10.93191
Var 36h NI row2-row10.829750.584
Var 60h I row2-row10.735560.582
Var 60h NI row2-row11.128420.904
Time course 0hI-0hNI1.138560.004
Time course 12hI-12hNI1.216640.287
Time course 36hI-36hNI1.562250.006
Time course 60hI-60hNI1.926810.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.098230.921
transgenic ySAMdc/azygous control (breaker)1.021081
transgenic ySAMdc/azygous control (red)1.138970.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.035940.042

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.978810.59

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.659040.172
Manapal/WT (break)0.813851
Manapal/WT (red)0.886630.607