Expression of 1-1-7.2.2.13
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.91733 | 0.511 |
27DAP/17DAP | 0.82458 | 0.585 |
39DAP/27DAP | 1.13878 | 0.765 |
41DAP/39DAP | 1.54065 | 0.266 |
42DAP/41DAP | 0.97889 | 1 |
43DAP/42DAP | 0.81614 | 0.613 |
47DAP/43DAP | 0.93085 | 0.699 |
52DAP/47DAP | 1.82482 | 0.12 |
57DAP/52DAP | 0.69623 | 0.507 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.00516 | 0.787 |
17DAP/reference | 0.99915 | 1 |
27DAP/reference | 0.89025 | 0.092 |
39DAP/reference | 0.99967 | 1 |
41DAP/reference | 0.95281 | 0.434 |
42DAP/reference | 1.09356 | 1 |
43DAP/reference | 0.99196 | 0.82 |
47DAP/reference | 0.97156 | 0.279 |
52DAP/reference | 0.86608 | 0.055 |
57DAP/reference | 0.93899 | 0.235 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.76212 | 0.153 |
27DAP/17DAP | 0.9445 | 0.854 |
39DAP/27DAP | 1.07848 | 0.615 |
41DAP/39DAP | 1.03895 | 1 |
42DAP/41DAP | 1.09351 | 0.773 |
43DAP/42DAP | 0.98806 | 0.928 |
47DAP/43DAP | 1.12765 | 0.581 |
52DAP/47DAP | 0.98652 | 0.913 |
57DAP/52DAP | 0.95101 | 0.601 |
57DAP/7DAP | 0.78946 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.84 | 0.108 |
17DAP/reference | 0.78914 | 0.014 |
27DAP/reference | 0.81804 | 0.01 |
39DAP/reference | 0.76626 | 0.011 |
41DAP/reference | 0.81249 | 0.023 |
42DAP/reference | 0.80492 | 0.012 |
43DAP/reference | 0.71617 | 0.011 |
47DAP/reference | 0.86816 | 0.101 |
52DAP/reference | 0.81897 | 0.03 |
57DAP/reference | 0.73791 | 0.006 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.20189 | 0.056 |
17DAP/reference | 1.17186 | 0.019 |
27DAP/reference | 1.12668 | 0.166 |
39DAP/reference | 0.80303 | 0.018 |
41DAP/reference | 1.01454 | 1 |
42DAP/reference | 0.95012 | 0.212 |
43DAP/reference | 1.30584 | 0.027 |
47DAP/reference | 1.04915 | 0.366 |
52DAP/reference | 1.12677 | 0.181 |
57DAP/reference | 1.35095 | 0.123 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.83791 | 0.044 |
17DAP/reference | 0.92129 | 0.358 |
27DAP/reference | 0.76039 | 0.031 |
39DAP/reference | 0.75557 | 0.022 |
41DAP/reference | 0.8545 | 0.025 |
42DAP/reference | 0.83414 | 0.036 |
43DAP/reference | 0.82938 | 0.02 |
47DAP/reference | 0.94898 | 0.396 |
52DAP/reference | 0.73465 | 0.118 |
57DAP/reference | 0.79788 | 0.109 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.06474 | 0.966 |
26DAP/20DAP | 0.86573 | 0.512 |
34DAP/26DAP | 1.40557 | 1 |
51DAP/34DAP | 0.92326 | 0.492 |
52DAP/51DAP | 1.1278 | 0.616 |
53DAP/52DAP | 0.93494 | 0.695 |
55DAP/53DAP | 1.05415 | 0.82 |
57DAP/55DAP | 0.88704 | 0.583 |
62DAP/57DAP | 1.35333 | 0.047 |
68DAP/62DAP | 0.74837 | 0.505 |
68DAP/14DAP | 0.98239 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.94857 | 0.493 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.55022 | |
Mature Green Tomato/Ripe Tomato | 1.16968 | 0.478 |
Immature Eggplant/Mature Eggplant | 8.10118 | 0.05 |
Ripe Pepper/Ripe Tomato | 0.56352 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.5559 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 0.95294 | 0.944 |
1-1-2/M82 | 1.10788 | |
12-2/M82 | N/A | N/A |
12-4/M82 | 1.01696 | 1 |
1-3/M82 | 0.93303 | 0.378 |
2-1-1/M82 | N/A | N/A |
2-1/M82 | N/A | N/A |
2-6/M82 | 1.04741 | 1 |
3-2/M82 | 0.92109 | |
4-1-1/M82 | 1.04445 | 1 |
4-1/M82 | 1.10369 | 1 |
4-3-2/M82 | 0.74167 | 1 |
4-3/M82 | 0.791 | 0.578 |
5-3/M82 | 0.93377 | 1 |
6-2/M82 | 0.73749 | 0.497 |
6-3/M82 | N/A | N/A |
7-1/M82 | 1.0353 | |
7-2/M82 | 1.02327 | |
9-3-2/M82 | 1.00502 | 1 |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.88747 | 1 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.1529 | 1 |
IL12-4/WTpooled | 0.99457 | 1 |
IL1-4/WTpooled | N/A | N/A |
WT/WTpooled | 1.09919 | 0.957 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.19976 | 0.853 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.02847 | 0.921 |
DC3000/delta hrp 6h | 1.12106 | 1 |
DC3000/delta hrp 12h | 0.92596 | 1 |
DC3000/delta hrp 24h | 1.25181 | 0.043 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.15495 | 0.094 |
DC3000 delta B/DC3000 delta AB | 1.17428 | 0.282 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.96692 | 1 |
Exp 36h | 1.27424 | 0.489 |
Exp 60h | 1.24316 | 0.283 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 0.40891 | 1 |
Var 12h I row2-row1 | 1.08701 | 0.736 |
Var 12h NI row2-row1 | 1.26787 | 0.649 |
Var 36h I row2-row1 | 0.9319 | 1 |
Var 36h NI row2-row1 | 0.82975 | 0.584 |
Var 60h I row2-row1 | 0.73556 | 0.582 |
Var 60h NI row2-row1 | 1.12842 | 0.904 |
Time course 0hI-0hNI | 1.13856 | 0.004 |
Time course 12hI-12hNI | 1.21664 | 0.287 |
Time course 36hI-36hNI | 1.56225 | 0.006 |
Time course 60hI-60hNI | 1.92681 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.09823 | 0.921 |
transgenic ySAMdc/azygous control (breaker) | 1.02108 | 1 |
transgenic ySAMdc/azygous control (red) | 1.13897 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.03594 | 0.042 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.97881 | 0.59 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.65904 | 0.172 |
Manapal/WT (break) | 0.81385 | 1 |
Manapal/WT (red) | 0.88663 | 0.607 |
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