Expression of 1-1-7.2.2.6
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.85691 | 0.373 |
27DAP/17DAP | 0.92992 | 0.863 |
39DAP/27DAP | 0.9514 | 0.67 |
41DAP/39DAP | 1.28136 | 0.306 |
42DAP/41DAP | 1.00373 | 1 |
43DAP/42DAP | 0.87962 | 0.55 |
47DAP/43DAP | 1.03438 | 0.842 |
52DAP/47DAP | 0.98636 | 0.886 |
57DAP/52DAP | 1.05715 | 0.958 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07232 | 0.252 |
17DAP/reference | 1.11735 | 0.026 |
27DAP/reference | 0.9901 | 0.763 |
39DAP/reference | 1.00187 | 1 |
41DAP/reference | 1.07282 | 0.158 |
42DAP/reference | 0.999 | 0.645 |
43DAP/reference | 1.0305 | 0.787 |
47DAP/reference | 0.96596 | 0.242 |
52DAP/reference | 0.90554 | 0.275 |
57DAP/reference | 0.92308 | 0.199 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.90495 | 0.17 |
27DAP/17DAP | 1.01121 | 1 |
39DAP/27DAP | 1.03699 | 0.56 |
41DAP/39DAP | 0.9863 | 1 |
42DAP/41DAP | 0.97864 | 0.774 |
43DAP/42DAP | 0.99686 | 1 |
47DAP/43DAP | 0.96093 | 0.617 |
52DAP/47DAP | 0.95883 | 0.837 |
57DAP/52DAP | 0.96788 | 0.678 |
57DAP/7DAP | 0.92777 | 1 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.39152 | 0.045 |
17DAP/reference | 1.635 | 0.011 |
27DAP/reference | 1.5509 | 0.01 |
39DAP/reference | 1.69274 | 0.007 |
41DAP/reference | 1.67278 | 0.018 |
42DAP/reference | 1.72002 | 0.007 |
43DAP/reference | 1.95076 | 0.01 |
47DAP/reference | 1.24746 | 0.337 |
52DAP/reference | 1.55002 | 0.013 |
57DAP/reference | 1.64033 | 0.01 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.12741 | 0.254 |
17DAP/reference | 1.01374 | 0.859 |
27DAP/reference | 0.95469 | 0.438 |
39DAP/reference | 0.87593 | 0.067 |
41DAP/reference | 0.90235 | 0.108 |
42DAP/reference | 0.91105 | 0.073 |
43DAP/reference | 0.98712 | 0.67 |
47DAP/reference | 0.99308 | 0.625 |
52DAP/reference | 0.99266 | 0.619 |
57DAP/reference | 1.10892 | 0.15 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.49285 | 0.022 |
17DAP/reference | 1.28736 | 0.09 |
27DAP/reference | 1.50859 | 0.022 |
39DAP/reference | 1.37858 | 0.012 |
41DAP/reference | 1.43329 | 0.009 |
42DAP/reference | 1.15707 | 0.313 |
43DAP/reference | 1.06738 | 0.91 |
47DAP/reference | 0.9921 | 0.61 |
52DAP/reference | 1.31038 | 0.19 |
57DAP/reference | 0.84658 | 0.12 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.05666 | 0.24 |
26DAP/20DAP | 0.97129 | 1 |
34DAP/26DAP | 1.04781 | 1 |
51DAP/34DAP | 1.07758 | 0.746 |
52DAP/51DAP | 0.95105 | 1 |
53DAP/52DAP | 1.01213 | 0.961 |
55DAP/53DAP | 1.0252 | 0.964 |
57DAP/55DAP | 0.98195 | 0.88 |
62DAP/57DAP | 1.32548 | 0.393 |
68DAP/62DAP | 1.28228 | 0.507 |
68DAP/14DAP | 0.84613 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 0.84931 | 0.02 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 1.14935 | 0.176 |
Mature Green Tomato/Ripe Tomato | 0.65347 | 0.132 |
Immature Eggplant/Mature Eggplant | 0.86037 | 0.159 |
Ripe Pepper/Ripe Tomato | 0.53124 | 0.293 |
Mature Eggplant/Ripe Tomato | 1.26863 | 0.373 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.14879 | 0.877 |
1-1-2/M82 | 0.89764 | 0.958 |
12-2/M82 | 1.0453 | 1 |
12-4/M82 | 0.91958 | 1 |
1-3/M82 | 0.98855 | 1 |
2-1-1/M82 | 1.11205 | 0.422 |
2-1/M82 | 1.21627 | 0.345 |
2-6/M82 | 1.0653 | 0.695 |
3-2/M82 | 0.93231 | |
4-1-1/M82 | 0.91933 | 1 |
4-1/M82 | 0.92975 | 1 |
4-3-2/M82 | 0.99563 | 1 |
4-3/M82 | 1.18056 | 1 |
5-3/M82 | 1.04527 | 1 |
6-2/M82 | 0.97246 | 1 |
6-3/M82 | 0.98783 | 1 |
7-1/M82 | 0.80399 | 0.803 |
7-2/M82 | 1.1311 | 1 |
9-3-2/M82 | 0.93444 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.74974 | 0.247 |
IL2-6/WTpooled | N/A | N/A |
IL7-5/WTpooled | 0.90593 | |
IL7-3/WTpooled | N/A | N/A |
IL12-4/WTpooled | 0.51896 | |
IL1-4/WTpooled | 0.83061 | |
WT/WTpooled | 1.21936 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 0.9433 | 0.975 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.0018 | 1 |
DC3000/delta hrp 6h | 0.90775 | 0.95 |
DC3000/delta hrp 12h | 0.92995 | 1 |
DC3000/delta hrp 24h | 1.03275 | 0.728 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 0.9481 | 0.841 |
DC3000 delta B/DC3000 delta AB | 0.99114 | 1 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 0.8736 | 1 |
Exp 36h | 1.18742 | 1 |
Exp 60h | 1.22932 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 5.07196 | 0.936 |
Var 12h I row2-row1 | 0.81614 | 0.627 |
Var 12h NI row2-row1 | 0.94486 | 0.906 |
Var 36h I row2-row1 | 0.81716 | 0.575 |
Var 36h NI row2-row1 | 1.33075 | 1 |
Var 60h I row2-row1 | 1.0529 | |
Var 60h NI row2-row1 | 1.02956 | 1 |
Time course 0hI-0hNI | 0.99047 | 1 |
Time course 12hI-12hNI | 1.0815 | 0.611 |
Time course 36hI-36hNI | 0.8651 | 0.073 |
Time course 60hI-60hNI | 0.71827 | 0.006 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 1.11292 | 0.286 |
transgenic ySAMdc/azygous control (breaker) | 2.22323 | 0.162 |
transgenic ySAMdc/azygous control (red) | 1.13681 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.05424 | 0.047 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 1.11182 | 0.277 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.86169 | 1 |
Manapal/WT (break) | 1.06766 | 1 |
Manapal/WT (red) | 0.7765 | 0.315 |
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