Expression of 1-1-7.2.2.6

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.856910.373
27DAP/17DAP0.929920.863
39DAP/27DAP0.95140.67
41DAP/39DAP1.281360.306
42DAP/41DAP1.003731
43DAP/42DAP0.879620.55
47DAP/43DAP1.034380.842
52DAP/47DAP0.986360.886
57DAP/52DAP1.057150.958

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference1.072320.252
17DAP/reference1.117350.026
27DAP/reference0.99010.763
39DAP/reference1.001871
41DAP/reference1.072820.158
42DAP/reference0.9990.645
43DAP/reference1.03050.787
47DAP/reference0.965960.242
52DAP/reference0.905540.275
57DAP/reference0.923080.199

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.904950.17
27DAP/17DAP1.011211
39DAP/27DAP1.036990.56
41DAP/39DAP0.98631
42DAP/41DAP0.978640.774
43DAP/42DAP0.996861
47DAP/43DAP0.960930.617
52DAP/47DAP0.958830.837
57DAP/52DAP0.967880.678
57DAP/7DAP0.927771

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.391520.045
17DAP/reference1.6350.011
27DAP/reference1.55090.01
39DAP/reference1.692740.007
41DAP/reference1.672780.018
42DAP/reference1.720020.007
43DAP/reference1.950760.01
47DAP/reference1.247460.337
52DAP/reference1.550020.013
57DAP/reference1.640330.01

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.127410.254
17DAP/reference1.013740.859
27DAP/reference0.954690.438
39DAP/reference0.875930.067
41DAP/reference0.902350.108
42DAP/reference0.911050.073
43DAP/reference0.987120.67
47DAP/reference0.993080.625
52DAP/reference0.992660.619
57DAP/reference1.108920.15

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.492850.022
17DAP/reference1.287360.09
27DAP/reference1.508590.022
39DAP/reference1.378580.012
41DAP/reference1.433290.009
42DAP/reference1.157070.313
43DAP/reference1.067380.91
47DAP/reference0.99210.61
52DAP/reference1.310380.19
57DAP/reference0.846580.12

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.056660.24
26DAP/20DAP0.971291
34DAP/26DAP1.047811
51DAP/34DAP1.077580.746
52DAP/51DAP0.951051
53DAP/52DAP1.012130.961
55DAP/53DAP1.02520.964
57DAP/55DAP0.981950.88
62DAP/57DAP1.325480.393
68DAP/62DAP1.282280.507
68DAP/14DAP0.846131

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker0.849310.02

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper1.149350.176
Mature Green Tomato/Ripe Tomato0.653470.132
Immature Eggplant/Mature Eggplant0.860370.159
Ripe Pepper/Ripe Tomato0.531240.293
Mature Eggplant/Ripe Tomato1.268630.373

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.148790.877
1-1-2/M820.897640.958
12-2/M821.04531
12-4/M820.919581
1-3/M820.988551
2-1-1/M821.112050.422
2-1/M821.216270.345
2-6/M821.06530.695
3-2/M820.93231
4-1-1/M820.919331
4-1/M820.929751
4-3-2/M820.995631
4-3/M821.180561
5-3/M821.045271
6-2/M820.972461
6-3/M820.987831
7-1/M820.803990.803
7-2/M821.13111
9-3-2/M820.93444

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.749740.247
IL2-6/WTpooledN/AN/A
IL7-5/WTpooled0.90593
IL7-3/WTpooledN/AN/A
IL12-4/WTpooled0.51896
IL1-4/WTpooled0.83061
WT/WTpooled1.219361

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation0.94330.975

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.00181
DC3000/delta hrp 6h0.907750.95
DC3000/delta hrp 12h0.929951
DC3000/delta hrp 24h1.032750.728

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta AB0.94810.841
DC3000 delta B/DC3000 delta AB0.991141

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h0.87361
Exp 36h1.187421
Exp 60h1.229320.563

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h5.071960.936
Var 12h I row2-row10.816140.627
Var 12h NI row2-row10.944860.906
Var 36h I row2-row10.817160.575
Var 36h NI row2-row11.330751
Var 60h I row2-row11.0529
Var 60h NI row2-row11.029561
Time course 0hI-0hNI0.990471
Time course 12hI-12hNI1.08150.611
Time course 36hI-36hNI0.86510.073
Time course 60hI-60hNI0.718270.006

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)1.112920.286
transgenic ySAMdc/azygous control (breaker)2.223230.162
transgenic ySAMdc/azygous control (red)1.136810.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.054240.047

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt1.111820.277

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.861691
Manapal/WT (break)1.067661
Manapal/WT (red)0.77650.315