Expression of 1-1-7.2.2.7

r value cutoff
Experiment: Wild type tomato fruit development (set 1)
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.664160.025
27DAP/17DAP1.506140.872
39DAP/27DAP1.657510.101
41DAP/39DAP1.036521
42DAP/41DAP1.990380.023
43DAP/42DAP1.566760.793
47DAP/43DAP1.549670.215
52DAP/47DAP0.629560.175
57DAP/52DAP1.32510.771

Experiment: Wild type tomato fruit development (set 2)
hybridizationratioFDR (corrected p value)
7DAP/reference0.877640.035
17DAP/reference0.92030.091
27DAP/reference0.868290.075
39DAP/reference0.902850.114
41DAP/reference0.916960.201
42DAP/reference0.986040.425
43DAP/reference1.12740.025
47DAP/reference1.288180.026
52DAP/reference1.153810.32
57DAP/reference1.120320.18

Experiment: tomato Never-ripe mutant fruit development
hybridizationratioFDR (corrected p value)
17DAP/7DAP0.920780.496
27DAP/17DAP1.030090.969
39DAP/27DAP1.170840.32
41DAP/39DAP0.880760.481
42DAP/41DAP1.284020.217
43DAP/42DAP1.347190.056
47DAP/43DAP1.181130.389
52DAP/47DAP1.163280.504
57DAP/52DAP1.196460.427
57DAP/7DAP0.87082

Experiment: tomato rin mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.038460.91
17DAP/reference1.210240.032
27DAP/reference1.133780.131
39DAP/reference1.111630.486
41DAP/reference1.044060.864
42DAP/reference1.420750.021
43DAP/reference1.538660.018
47DAP/reference1.178460.285
52DAP/reference1.211380.113
57DAP/reference1.340510.066

Experiment: tomato nor mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference0.999730.907
17DAP/reference0.95650.447
27DAP/reference1.009521
39DAP/reference0.978870.509
41DAP/reference0.98220.519
42DAP/reference0.916090.15
43DAP/reference0.712620.015
47DAP/reference0.880530.015
52DAP/reference1.038110.559
57DAP/reference0.987070.68

Experiment: tomato hp1 mutant fruit development
hybridizationratioFDR (corrected p value)
7DAP/reference1.071370.408
17DAP/reference0.894170.313
27DAP/reference1.458750.03
39DAP/reference1.241470.055
41DAP/reference1.142420.249
42DAP/reference1.543910.015
43DAP/reference1.580010.008
47DAP/reference1.231820.028
52DAP/reference1.550360.061
57DAP/reference1.340510.116

Experiment: Wild type pepper fruit development
hybridizationratioFDR (corrected p value)
20DAP/14DAP1.162550.966
26DAP/20DAP1.05653
34DAP/26DAP1.764321
51DAP/34DAP1.160230.445
52DAP/51DAP1.16922
53DAP/52DAP1.35680.662
55DAP/53DAP0.94950.735
57DAP/55DAP0.833850.468
62DAP/57DAP1.61293
68DAP/62DAP2.572620.069
68DAP/14DAP1.520690.676

Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridizationratioFDR (corrected p value)
Tomato Breaker/Pepper Breaker3.046010.014

Experiment: Solanaceae fruit comparison
hybridizationratioFDR (corrected p value)
Green Pepper/Ripe Pepper0.683710.19
Mature Green Tomato/Ripe Tomato0.273520.016
Immature Eggplant/Mature Eggplant1.166580.165
Ripe Pepper/Ripe Tomato0.451680.224
Mature Eggplant/Ripe Tomato1.280251

Experiment: IL carotenoid
hybridizationratioFDR (corrected p value)
11-1/M821.224390.188
1-1-2/M821.146811
12-2/M821.211141
12-4/M821.662331
1-3/M821.601320.26
2-1-1/M821.222890.457
2-1/M820.869160.306
2-6/M821.657550.329
3-2/M821.230020.84
4-1-1/M821.816031
4-1/M821.809050.853
4-3-2/M822.475740.241
4-3/M822.290561
5-3/M820.98931
6-2/M821.642981
6-3/M821.03461
7-1/M821.002081
7-2/M821.158380.324
9-3-2/M822.19797

Experiment: Tomato introgression line transcript analysis
hybridizationratioFDR (corrected p value)
IL4-4/WTpooled0.997621
IL2-6/WTpooled1.122540.584
IL7-5/WTpooled1.290391
IL7-3/WTpooled0.786750.418
IL12-4/WTpooled1.242190.785
IL1-4/WTpooled0.678280.562
WT/WTpooled1.045630.911

Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridizationratioFDR (corrected p value)
10 h post inoculation1.127450.222

Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridizationratioFDR (corrected p value)
DC3000/delat hrp 0h1.001371
DC3000/delta hrp 6h0.916450.95
DC3000/delta hrp 12h0.947121
DC3000/delta hrp 24h1.05180.567

Experiment: DC3000 effector mutants
hybridizationratioFDR (corrected p value)
DC3000 delta A/DC3000 delta ABN/AN/A
DC3000 delta B/DC3000 delta ABN/AN/A

Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridizationratioFDR (corrected p value)
Exp 12h1.09971
Exp 36h1.168931
Exp 60h1.067521

Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridizationratioFDR (corrected p value)
self-selfN/AN/A
Var 0h4.302310.259
Var 12h I row2-row10.62611
Var 12h NI row2-row11.10933
Var 36h I row2-row11.00021
Var 36h NI row2-row10.925540.549
Var 60h I row2-row10.50648
Var 60h NI row2-row10.846480.431
Time course 0hI-0hNI0.959020.936
Time course 12hI-12hNI1.107330.72
Time course 36hI-36hNI1.634040.004
Time course 60hI-60hNI4.943150.008

Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridizationratioFDR (corrected p value)
transgenic ySAMdc/azygous control (mature green)0.851640.246
transgenic ySAMdc/azygous control (breaker)1.177230.248
transgenic ySAMdc/azygous control (red)1.157070.92

Experiment: Tomato root culture and Al treatment
hybridizationratioFDR (corrected p value)
Al-treated/control1.086080.035

Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridizationratioFDR (corrected p value)
salt-treated/no salt0.82520.238

Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridizationratioFDR (corrected p value)
Manapal/WT (mature green)0.747470.172
Manapal/WT (break)1.01811
Manapal/WT (red)0.648060.181