Expression of 1-1-7.2.2.7
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.66416 | 0.025 |
27DAP/17DAP | 1.50614 | 0.872 |
39DAP/27DAP | 1.65751 | 0.101 |
41DAP/39DAP | 1.03652 | 1 |
42DAP/41DAP | 1.99038 | 0.023 |
43DAP/42DAP | 1.56676 | 0.793 |
47DAP/43DAP | 1.54967 | 0.215 |
52DAP/47DAP | 0.62956 | 0.175 |
57DAP/52DAP | 1.3251 | 0.771 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.87764 | 0.035 |
17DAP/reference | 0.9203 | 0.091 |
27DAP/reference | 0.86829 | 0.075 |
39DAP/reference | 0.90285 | 0.114 |
41DAP/reference | 0.91696 | 0.201 |
42DAP/reference | 0.98604 | 0.425 |
43DAP/reference | 1.1274 | 0.025 |
47DAP/reference | 1.28818 | 0.026 |
52DAP/reference | 1.15381 | 0.32 |
57DAP/reference | 1.12032 | 0.18 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92078 | 0.496 |
27DAP/17DAP | 1.03009 | 0.969 |
39DAP/27DAP | 1.17084 | 0.32 |
41DAP/39DAP | 0.88076 | 0.481 |
42DAP/41DAP | 1.28402 | 0.217 |
43DAP/42DAP | 1.34719 | 0.056 |
47DAP/43DAP | 1.18113 | 0.389 |
52DAP/47DAP | 1.16328 | 0.504 |
57DAP/52DAP | 1.19646 | 0.427 |
57DAP/7DAP | 0.87082 | |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.03846 | 0.91 |
17DAP/reference | 1.21024 | 0.032 |
27DAP/reference | 1.13378 | 0.131 |
39DAP/reference | 1.11163 | 0.486 |
41DAP/reference | 1.04406 | 0.864 |
42DAP/reference | 1.42075 | 0.021 |
43DAP/reference | 1.53866 | 0.018 |
47DAP/reference | 1.17846 | 0.285 |
52DAP/reference | 1.21138 | 0.113 |
57DAP/reference | 1.34051 | 0.066 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.99973 | 0.907 |
17DAP/reference | 0.9565 | 0.447 |
27DAP/reference | 1.00952 | 1 |
39DAP/reference | 0.97887 | 0.509 |
41DAP/reference | 0.9822 | 0.519 |
42DAP/reference | 0.91609 | 0.15 |
43DAP/reference | 0.71262 | 0.015 |
47DAP/reference | 0.88053 | 0.015 |
52DAP/reference | 1.03811 | 0.559 |
57DAP/reference | 0.98707 | 0.68 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.07137 | 0.408 |
17DAP/reference | 0.89417 | 0.313 |
27DAP/reference | 1.45875 | 0.03 |
39DAP/reference | 1.24147 | 0.055 |
41DAP/reference | 1.14242 | 0.249 |
42DAP/reference | 1.54391 | 0.015 |
43DAP/reference | 1.58001 | 0.008 |
47DAP/reference | 1.23182 | 0.028 |
52DAP/reference | 1.55036 | 0.061 |
57DAP/reference | 1.34051 | 0.116 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.16255 | 0.966 |
26DAP/20DAP | 1.05653 | |
34DAP/26DAP | 1.76432 | 1 |
51DAP/34DAP | 1.16023 | 0.445 |
52DAP/51DAP | 1.16922 | |
53DAP/52DAP | 1.3568 | 0.662 |
55DAP/53DAP | 0.9495 | 0.735 |
57DAP/55DAP | 0.83385 | 0.468 |
62DAP/57DAP | 1.61293 | |
68DAP/62DAP | 2.57262 | 0.069 |
68DAP/14DAP | 1.52069 | 0.676 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 3.04601 | 0.014 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.68371 | 0.19 |
Mature Green Tomato/Ripe Tomato | 0.27352 | 0.016 |
Immature Eggplant/Mature Eggplant | 1.16658 | 0.165 |
Ripe Pepper/Ripe Tomato | 0.45168 | 0.224 |
Mature Eggplant/Ripe Tomato | 1.28025 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.22439 | 0.188 |
1-1-2/M82 | 1.14681 | 1 |
12-2/M82 | 1.21114 | 1 |
12-4/M82 | 1.66233 | 1 |
1-3/M82 | 1.60132 | 0.26 |
2-1-1/M82 | 1.22289 | 0.457 |
2-1/M82 | 0.86916 | 0.306 |
2-6/M82 | 1.65755 | 0.329 |
3-2/M82 | 1.23002 | 0.84 |
4-1-1/M82 | 1.81603 | 1 |
4-1/M82 | 1.80905 | 0.853 |
4-3-2/M82 | 2.47574 | 0.241 |
4-3/M82 | 2.29056 | 1 |
5-3/M82 | 0.9893 | 1 |
6-2/M82 | 1.64298 | 1 |
6-3/M82 | 1.0346 | 1 |
7-1/M82 | 1.00208 | 1 |
7-2/M82 | 1.15838 | 0.324 |
9-3-2/M82 | 2.19797 | |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | 0.99762 | 1 |
IL2-6/WTpooled | 1.12254 | 0.584 |
IL7-5/WTpooled | 1.29039 | 1 |
IL7-3/WTpooled | 0.78675 | 0.418 |
IL12-4/WTpooled | 1.24219 | 0.785 |
IL1-4/WTpooled | 0.67828 | 0.562 |
WT/WTpooled | 1.04563 | 0.911 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.12745 | 0.222 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 1.00137 | 1 |
DC3000/delta hrp 6h | 0.91645 | 0.95 |
DC3000/delta hrp 12h | 0.94712 | 1 |
DC3000/delta hrp 24h | 1.0518 | 0.567 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | N/A | N/A |
DC3000 delta B/DC3000 delta AB | N/A | N/A |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.0997 | 1 |
Exp 36h | 1.16893 | 1 |
Exp 60h | 1.06752 | 1 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | N/A | N/A |
Var 0h | 4.30231 | 0.259 |
Var 12h I row2-row1 | 0.62611 | |
Var 12h NI row2-row1 | 1.10933 | |
Var 36h I row2-row1 | 1.0002 | 1 |
Var 36h NI row2-row1 | 0.92554 | 0.549 |
Var 60h I row2-row1 | 0.50648 | |
Var 60h NI row2-row1 | 0.84648 | 0.431 |
Time course 0hI-0hNI | 0.95902 | 0.936 |
Time course 12hI-12hNI | 1.10733 | 0.72 |
Time course 36hI-36hNI | 1.63404 | 0.004 |
Time course 60hI-60hNI | 4.94315 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.85164 | 0.246 |
transgenic ySAMdc/azygous control (breaker) | 1.17723 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.15707 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.08608 | 0.035 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.8252 | 0.238 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 0.74747 | 0.172 |
Manapal/WT (break) | 1.0181 | 1 |
Manapal/WT (red) | 0.64806 | 0.181 |
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