Expression of 1-1-7.2.20.16
Experiment: Wild type tomato fruit development (set 1)
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.92406 | 0.689 |
27DAP/17DAP | 1.12078 | 1 |
39DAP/27DAP | 1.22801 | 0.749 |
41DAP/39DAP | 1.11159 | 0.17 |
42DAP/41DAP | 0.8991 | 1 |
43DAP/42DAP | 1.18558 | 1 |
47DAP/43DAP | 0.94942 | 0.645 |
52DAP/47DAP | 0.94952 | 0.875 |
57DAP/52DAP | 1.11145 | 1 |
Experiment: Wild type tomato fruit development (set 2)
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.8152 | 0.024 |
17DAP/reference | 0.96061 | 0.208 |
27DAP/reference | 0.97516 | 0.595 |
39DAP/reference | 1.02639 | 0.842 |
41DAP/reference | 0.93294 | 0.201 |
42DAP/reference | 0.97238 | 0.268 |
43DAP/reference | 0.99629 | 0.882 |
47DAP/reference | 1.09821 | 0.024 |
52DAP/reference | 0.85304 | 0.062 |
57DAP/reference | 0.91734 | 0.065 |
Experiment: tomato Never-ripe mutant fruit development
hybridization | ratio | FDR (corrected p value) |
17DAP/7DAP | 0.95274 | 0.484 |
27DAP/17DAP | 0.98179 | 0.878 |
39DAP/27DAP | 1.10873 | 0.3 |
41DAP/39DAP | 0.95437 | 0.849 |
42DAP/41DAP | 0.99938 | 0.894 |
43DAP/42DAP | 1.00631 | 1 |
47DAP/43DAP | 1.0348 | 0.827 |
52DAP/47DAP | 0.99232 | 0.941 |
57DAP/52DAP | 1.04749 | 0.726 |
57DAP/7DAP | 1.13211 | 0.365 |
Experiment: tomato rin mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.13156 | 0.377 |
17DAP/reference | 1.60026 | 0.006 |
27DAP/reference | 1.40557 | 0.008 |
39DAP/reference | 1.64292 | 0.005 |
41DAP/reference | 1.63909 | 0.009 |
42DAP/reference | 1.7982 | 0.006 |
43DAP/reference | 2.07017 | 0.009 |
47DAP/reference | 1.50219 | 0.219 |
52DAP/reference | 1.87358 | 0.007 |
57DAP/reference | 2.35005 | 0.004 |
Experiment: tomato nor mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 0.90784 | 0.145 |
17DAP/reference | 0.9422 | 0.279 |
27DAP/reference | 0.90808 | 0.119 |
39DAP/reference | 0.85854 | 0.11 |
41DAP/reference | 0.94798 | 0.226 |
42DAP/reference | 0.92394 | 0.018 |
43DAP/reference | 1.0073 | 0.831 |
47DAP/reference | 1.23688 | 0.343 |
52DAP/reference | 0.96705 | 0.259 |
57DAP/reference | 1.18493 | 0.075 |
Experiment: tomato hp1 mutant fruit development
hybridization | ratio | FDR (corrected p value) |
7DAP/reference | 1.16511 | 0.069 |
17DAP/reference | 1.06776 | 0.784 |
27DAP/reference | 1.54093 | 0.023 |
39DAP/reference | 1.55353 | 0.01 |
41DAP/reference | 1.47732 | 0.01 |
42DAP/reference | 1.48281 | 0.026 |
43DAP/reference | 1.45045 | 0.048 |
47DAP/reference | 1.14379 | 0.089 |
52DAP/reference | 1.72036 | 0.036 |
57DAP/reference | 1.08123 | 0.693 |
Experiment: Wild type pepper fruit development
hybridization | ratio | FDR (corrected p value) |
20DAP/14DAP | 1.01767 | 0.966 |
26DAP/20DAP | 1.04022 | 0.941 |
34DAP/26DAP | 0.99543 | 1 |
51DAP/34DAP | 1.33028 | 0.068 |
52DAP/51DAP | 0.90902 | 1 |
53DAP/52DAP | 1.01081 | 0.983 |
55DAP/53DAP | 1.02954 | 1 |
57DAP/55DAP | 1.02889 | 0.986 |
62DAP/57DAP | 1.00866 | 1 |
68DAP/62DAP | 0.91729 | 0.7 |
68DAP/14DAP | 0.91349 | 1 |
Experiment: Tomato (breaker-stage) vs. Pepper (breaker-stage)
hybridization | ratio | FDR (corrected p value) |
Tomato Breaker/Pepper Breaker | 1.14695 | 0.038 |
Experiment: Solanaceae fruit comparison
hybridization | ratio | FDR (corrected p value) |
Green Pepper/Ripe Pepper | 0.05613 | 0.039 |
Mature Green Tomato/Ripe Tomato | N/A | N/A |
Immature Eggplant/Mature Eggplant | 24.8131 | 0.05 |
Ripe Pepper/Ripe Tomato | 2.22265 | 0.193 |
Mature Eggplant/Ripe Tomato | 0.33788 | 1 |
Experiment: IL carotenoid
hybridization | ratio | FDR (corrected p value) |
11-1/M82 | 1.05073 | 0.877 |
1-1-2/M82 | 0.96922 | 0.958 |
12-2/M82 | 0.9953 | 1 |
12-4/M82 | 0.96184 | 0.33 |
1-3/M82 | 1.25365 | 0.479 |
2-1-1/M82 | 0.87915 | 0.465 |
2-1/M82 | 1.00634 | 1 |
2-6/M82 | 0.95281 | 1 |
3-2/M82 | 1.00182 | |
4-1-1/M82 | 1.11657 | 1 |
4-1/M82 | 0.88766 | |
4-3-2/M82 | 0.91117 | |
4-3/M82 | 0.93099 | 0.72 |
5-3/M82 | 0.97783 | 1 |
6-2/M82 | 0.91863 | 1 |
6-3/M82 | 0.99381 | 0.857 |
7-1/M82 | 0.9857 | 1 |
7-2/M82 | 1.04365 | 1 |
9-3-2/M82 | N/A | N/A |
Experiment: Tomato introgression line transcript analysis
hybridization | ratio | FDR (corrected p value) |
IL4-4/WTpooled | N/A | N/A |
IL2-6/WTpooled | 0.87763 | 0.473 |
IL7-5/WTpooled | N/A | N/A |
IL7-3/WTpooled | 1.10945 | 1 |
IL12-4/WTpooled | 1.08146 | 0.785 |
IL1-4/WTpooled | 0.84044 | |
WT/WTpooled | 0.95747 | 1 |
Experiment: Transcriptional changes determined by expression of the Xanthomonas AvrRxv effector in resistant tomato plants
hybridization | ratio | FDR (corrected p value) |
10 h post inoculation | 1.60113 | 0.479 |
Experiment: Time course of DC3000 vs delta hrp on tomato Prf-3
hybridization | ratio | FDR (corrected p value) |
DC3000/delat hrp 0h | 0.91549 | 1 |
DC3000/delta hrp 6h | 0.95303 | 0.95 |
DC3000/delta hrp 12h | 1.13344 | 1 |
DC3000/delta hrp 24h | 0.95353 | 0.618 |
Experiment: DC3000 effector mutants
hybridization | ratio | FDR (corrected p value) |
DC3000 delta A/DC3000 delta AB | 1.23519 | 0.25 |
DC3000 delta B/DC3000 delta AB | 1.39042 | 0.113 |
Experiment: Matt's wild cherry tomato vs. Phytophthora infestans
hybridization | ratio | FDR (corrected p value) |
Exp 12h | 1.23396 | 1 |
Exp 36h | 1.20888 | 1 |
Exp 60h | 1.19653 | 0.563 |
Experiment: Gene expression profiling of infection of tomato by Phytophthora infestans in the field
hybridization | ratio | FDR (corrected p value) |
self-self | 0.97002 | 1 |
Var 0h | N/A | N/A |
Var 12h I row2-row1 | 1.05884 | 0.736 |
Var 12h NI row2-row1 | 1.26561 | 1 |
Var 36h I row2-row1 | 1.1031 | 1 |
Var 36h NI row2-row1 | 0.75884 | 0.584 |
Var 60h I row2-row1 | 0.63963 | 0.285 |
Var 60h NI row2-row1 | 0.80099 | 0.458 |
Time course 0hI-0hNI | 1.11515 | 0.719 |
Time course 12hI-12hNI | 1.10607 | 0.65 |
Time course 36hI-36hNI | 2.11126 | 0.005 |
Time course 60hI-60hNI | 7.78699 | 0.008 |
Experiment: Transcriptional profiling of the tomato fruit pericarp tissue: fruits overexpressing yeast ySAMdc gene and controls
hybridization | ratio | FDR (corrected p value) |
transgenic ySAMdc/azygous control (mature green) | 0.65277 | 0.315 |
transgenic ySAMdc/azygous control (breaker) | 1.07725 | 0.248 |
transgenic ySAMdc/azygous control (red) | 1.22488 | 0.92 |
Experiment: Tomato root culture and Al treatment
hybridization | ratio | FDR (corrected p value) |
Al-treated/control | 1.12213 | 0.077 |
Experiment: Microarray Analysis on Salt Stress Affected Genes in Tomato Seedlings
hybridization | ratio | FDR (corrected p value) |
salt-treated/no salt | 0.73267 | 0.268 |
Experiment: Transcriptional Profiling of high pigment-2dg Tomato Mutant Fruit
hybridization | ratio | FDR (corrected p value) |
Manapal/WT (mature green) | 6.79094 | 0.09 |
Manapal/WT (break) | 3.13924 | 0.381 |
Manapal/WT (red) | 1.18717 | 0.413 |
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